Seminari


Tutti i seminari attinenti alle tematiche di Biologia cellulare e dello Sviluppo organizzati da questo corso di dottorato, dal dottorato GBM, dai Dipartimenti di Sapienza, dalla scuola BEMM e da altre Istituzioni sono considerati validi per la formazione dei dottorandi, e sono elencati nel Report Annuale di ciascun dottorando.

2025


From a danger signal to the biosynthesis of novel phenolic compounds
04/02/2025
Plant cell wall is an extracellular matrix composed of polysaccharides, polyphenols and proteins. The enzymatic hydrolysis of cell wall polysaccharides results in the production of oligosaccharides with nature of damage-associated molecular patterns (DAMPs) that are perceived by plants as danger signals1. Oligosaccharide-oxidases (OSOXs), flavoenzymes belonging to the sub-family of “berberine bridge enzyme-like proteins”, oxidize these oligosaccharides by quenching their DAMP action and concomitantly converting molecular O2 into H2O2 2-4. Here we show a novel reaction mechanism through which the oxidizing activity on short oligosaccharides, instead of producing H2O2, led to the reduction of oxidized phenols (bi- phenoquinones), highlighting a possible application of OSOXs in synthetic biology5. By combining the oxidative-polymerizing activity of metalloenzymes on simple phenolics and the reducing activity of OSOXs on bi-phenoquinones, we succeeded at synthetizing a variety of novel oligo-phenols potentially exploitable in different industrial sectors. Keywords: plant cell wall, DAMPs, oligosaccharide oxidase, bi-phenoquinone, oligo-phenols, synthetic biology. 1 Benedetti et al., 2015. doi: 10.1073/pnas.1504154112 2 Benedetti et al., 2018. doi: 10.1111/tpj.13852 3 Locci et al., 2019. doi: 10.1111/tpj.14237 4 Costantini et al., 2024. doi: 10.1093/plphys/kiad457 5 Giovannoni et al., 2025. doi: 10.1016/j.plaphy.2024.109466
Patient-derived organoids: powerful models for understanding molecular features and actionable vulnerabilities of human cancers
24/1/2025

L'immunità innata vista da un botanico per caso
24/1/2025

2024


Non-coding RNAs: Regulators, Targets, and Therapeutics
16/12/2024

Ex vivo gene therapy for DMD
16/12/2024

The role of (lnc)RNA-protein interactions at the interface of chromatin and cancer biology
02/12/2024
Over the past two decades RNA molecules have emerged as active regulators across a variety of biological processes. Among them, the class of long non-coding RNAs (lncRNAs) is under the spotlight for their contribution to several cancer hallmarks. I will introduce a newly identified chromatin-enriched lncRNA, which we named Chromosome Segregation Regulating noncoding RNA (CHERR). CHERR is a cancer- relevant lncRNA, and its depletion in lung cancer cells leads to the non-genetic loss of a known tumor suppressor, ARID2, a key subunit of the SWI/SNF chromatin remodelling complex. Our findings indicate that CHERR binds to the SWI/SNF subunits, potentially promoting the stability of the complex. In line with this, loss of CHERR disrupts ARID2 association with chromatin. Additionally, I’ll present our ongoing efforts to dissect RNA-protein interactions across cell cycle stages and I’ll introduce TREX, an RNA-centric method to map endogenous RNA- protein interactions with region resolution.
Sulfur metabolism, tRNA thiolation and stress adaptation
31/10/2024

Analysis of gene regulatory networks
29/10/2024

A (molecular) naturalist’s journey through Fe-S cluster biogenesis
28/10/2024

Applying proteomics and metabolomics to understand basic biological problems - integration of proteomics and metabolomics data
21/10/2024

Cellular and molecular actors of human muscle fibrosis in muscular disorders
10/09/2024

Understanding synaptic connectivity through protein structure and function
12/07/2024

Rett syndrome and beyond: molecular mechanisms and innovative therapeutic approaches
01/07/2024

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