VALERIO GUARRASI

PhD Graduate

PhD program:: XXXV


supervisor: Paola Paci
co-supervisor: Stefania Gubbiotti

Thesis title: Multimodal Deep Learning for Medical Imaging

As interpreting medical findings is multimodal by its very nature, artificial intelligence needs to be able to interpret multimodal biomedical data to understand the complex mechanisms underlying a disease to progress towards higher informative clinical decision-making, supporting the diagnosis and prognosis process. In this respect, this work presents novel multimodal deep learning (DL) methodologies useful for interpreting data modalities. In particular, it investigates methods for studying when, which and how to learn shared representations of multimodal data. Furthermore, it introduces an optimization algorithm that automatically selects the learning paradigms that should be fused in a pool of many, thus moving forward with respect to the typical handcrafted approaches where researchers and practitioners combine the learners on the basis of the nature of the data, the task at hand, the networks’ structure, and their experience. Finally, this work also studies methods to explain the decisions taken by the multimodal networks. The proposed methodologies are validated using multimodal data of patients affected by COVID-19, fusing radiomic and clinical data for diagnostic and prognostic targets, obtaining state-of-the-art results.

Research products

11573/1610494 - 2023 - Temporal Network Motifs: Models, Limitations, Evaluation
Liu, P.; Guarrasi, V.; Sariyuce, A. E. - 01a Articolo in rivista
paper: IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING (IEEE / Institute of Electrical and Electronics Engineers Incorporated:445 Hoes Lane:Piscataway, NJ 08854:(800)701-4333, (732)981-0060, EMAIL: subscription-service@ieee.org, INTERNET: http://www.ieee.org, Fax: (732)981-9667) pp. 945-957 - issn: 1041-4347 - wos: WOS:000895445500067 (9) - scopus: 2-s2.0-85105859386 (13)

11573/1699203 - 2023 - Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors
Vernocchi, P.; Marangelo, C.; Guerrera, S.; Del Chierico, F.; Guarrasi, V.; Gardini, S.; Conte, F.; Paci, P.; Ianiro, G.; Gasbarrini, A.; Vicari, S.; Putignani, L. - 01a Articolo in rivista
paper: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. 1287350- - issn: 1664-302X - wos: (0) - scopus: 2-s2.0-85181223184 (1)

11573/1570708 - 2022 - Convolutional neural networks for automated classification of prostate multiparametric magnetic resonance imaging based on image quality
Cipollari, S.; Guarrasi, V.; Pecoraro, M.; Bicchetti, M.; Messina, E.; Farina, L.; Paci, P.; Catalano, C.; Panebianco, V. - 01a Articolo in rivista
paper: JOURNAL OF MAGNETIC RESONANCE IMAGING (-Attuale:JOHN WILEY & SONS INC, 111 RIVER ST, HOBOKEN, USA, NJ, 07030 -Lippincott, Williams & Wilkins:530 Walnut Street:Philadelphia, PA 19106:(800)638-3030, (301)223-2300, EMAIL: orders@lww.com, INTERNET: http://www.lww.com, Fax: (301)223-2320, (301)223-2320) pp. - - issn: 1053-1807 - wos: WOS:000683168200001 (11) - scopus: 2-s2.0-85112637620 (15)

11573/1656613 - 2022 - Gut Microbiota Functional Traits, Blood pH, and Anti-GAD Antibodies Concur in the Clinical Characterization of T1D at Onset
Del Chierico, F.; Conta, G.; Matteoli, M. C.; Fierabracci, A.; Reddel, S.; Macari, G.; Gardini, S.; Guarrasi, V.; Levi Mortera, S.; Marzano, V.; Vernocchi, P.; Sciubba, F.; Marini, F.; Deodati, A.; Rapini, N.; Cianfarani, S.; Miccheli, A.; Putignani, L. - 01a Articolo in rivista
paper: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel (Matthaeustrasse 11) : Molecular Diversity Preservation International MDPI) pp. 10256- - issn: 1661-6596 - wos: WOS:000858377200001 (0) - scopus: 2-s2.0-85138416910 (0)

11573/1610490 - 2022 - Pareto optimization of deep networks for COVID-19 diagnosis from chest X-rays
Guarrasi, V.; D'amico, N. C.; Sicilia, R.; Cordelli, E.; Soda, P. - 01a Articolo in rivista
paper: PATTERN RECOGNITION (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. - - issn: 0031-3203 - wos: WOS:000697672400011 (2) - scopus: 2-s2.0-85112583272 (6)

11573/1660648 - 2022 - Gut Microbiota Ecology and Inferred Functions in Children With ASD Compared to Neurotypical Subjects
Vernocchi, P.; Ristori, M. V.; Guerrera, S.; Guarrasi, V.; Conte, F.; Russo, A.; Lupi, E.; Albitar-Nehme, S.; Gardini, S.; Paci, P.; Ianiro, G.; Vicari, S.; Gasbarrini, A.; Putignani, L. - 01a Articolo in rivista
paper: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-302X - wos: WOS:000815021400001 (7) - scopus: 2-s2.0-85133495447 (15)

11573/1610492 - 2021 - Fecal microbiota signatures of insulin resistance, inflammation, and metabolic syndrome in youth with obesity: a pilot study
Del Chierico, F.; Manco, M.; Gardini, S.; Guarrasi, V.; Russo, A.; Bianchi, M.; Tortosa, V.; Quagliariello, A.; Shashaj, B.; Fintini, D.; Putignani, L. - 01a Articolo in rivista
paper: ACTA DIABETOLOGICA (Springer Verlag Germany:Tiergartenstrasse 17, D 69121 Heidelberg Germany:011 49 6221 3450, EMAIL: g.braun@springer.de, INTERNET: http://www.springer.de, Fax: 011 49 6221 345229) pp. 1009-1022 - issn: 0940-5429 - wos: WOS:000631320900002 (29) - scopus: 2-s2.0-85103178725 (29)

11573/1570698 - 2021 - Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19
Fiscon, G.; Salvadore, F.; Guarrasi, V.; Garbuglia, A. R.; Paci, P. - 01a Articolo in rivista
paper: COMPUTERS IN BIOLOGY AND MEDICINE (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. 104657- - issn: 0010-4825 - wos: WOS:000687867000002 (7) - scopus: 2-s2.0-85110640723 (8)

11573/1656612 - 2021 - A multi-expert system to detect COVID-19 Cases in X-ray images
Guarrasi, V.; D(')Amico, N. C.; Sicilia, R.; Cordelli, E.; Soda, P. - 04b Atto di convegno in volume
conference: 34th IEEE International Symposium on Computer-Based Medical Systems, CBMS 2021 (Virtual; Online)
book: 2021 IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS) - (978-1-6654-4121-6)

11573/1610498 - 2021 - AIforCOVID: predicting the clinical outcomes in patients with COVID-19 applying AI to chest-X-rays. An Italian multicentre study
Soda, P.; D'amico, N. C.; Tessadori, J.; Valbusa, G.; Guarrasi, V.; Bortolotto, C.; Akbar, M. U.; Sicilia, R.; Cordelli, E.; Fazzini, D.; Cellina, M.; Oliva, G.; Callea, G.; Panella, S.; Cariati, M.; Cozzi, D.; Miele, V.; Stellato, E.; Carrafiello, G.; Castorani, G.; Simeone, A.; Preda, L.; Iannello, G.; Del Bue, A.; Tedoldi, F.; Ali, M.; Sona, D.; Papa, S. - 01a Articolo in rivista
paper: MEDICAL IMAGE ANALYSIS (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. - - issn: 1361-8415 - wos: WOS:000703160200003 (46) - scopus: 2-s2.0-85114234590 (56)

11573/1610496 - 2021 - Hepatitis C diagnosis and treatment in people who use drugs: mind the gap in the linkage to care
Taibi, C.; Luzzitelli, I.; Comandini, U. V.; Girardi, E.; Monacelli, G.; Rapisarda, L. M.; Garbuglia, A. R.; Minosse, C.; Guarrasi, V.; Vincenzi, L.; Iacomi, F.; D'offizi, G. - 01a Articolo in rivista
paper: EUROPEAN REVIEW FOR MEDICAL AND PHARMACOLOGICAL SCIENCES (Roma: Verduci publisher.) pp. 5913-5921 - issn: 1128-3602 - wos: WOS:000706996900004 (0) - scopus: 2-s2.0-85117145310 (0)

11573/1476293 - 2020 - Human Papillomavirus infections in cervical samples from HIV-positive women: evaluation of the presence of the nonavalent HPV genotypes and genetic diversity
Sias, C.; Guarrasi, V.; Minosse, C.; Lapa, D.; Nonno, F. D.; Capobianchi, M. R.; Garbuglia, A. R.; Del Porto, P.; Paci, P. - 01a Articolo in rivista
paper: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-302X - wos: WOS:000596563700001 (2) - scopus: 2-s2.0-85097398562 (4)

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