PAOLA PACI

Professore associato

email: paola.paci@uniroma1.it

Produzione scientifica

11573/1681989 - 2024 - Prospective validation study of a novel integrated pathway based on clinical features, MRI biomarkers and microRNAs for early detection of prostate cancer

Pecoraro, Martina; Catanzaro, Giuseppina; Conte, Federica; Besharat, Zein Mersini; Messina, Emanuele; Laschena, Ludovica; Trocchianesi, Sofia; Splendiani, Elena; Sciarra, Alessandro; Catalano, Carlo; Paci, Paola; Ferretti, Elisabetta; Panebianco, Valeria - 01a Articolo in rivista

rivista: EUROPEAN UROLOGY ONCOLOGY ([Amsterdam]: European Association of Urology; Published by Elsevier B.V.) pp. - - issn: 2588-9311 - wos: WOS:001171264200001 (1) - scopus: 2-s2.0-85181477687 (1)

11573/1702302 - 2023 - A network-based bioinformatic analysis for identifying potential repurposable active molecules in different types of human cancers

Brunetti, M.; Paci, P.; Fiscon, G. - 04b Atto di convegno in volume

congresso: 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 (Istanbul, Turchia)

libro: Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 - ()

11573/1691730 - 2023 - Network analysis identifies circulating miR-155 as predictive biomarker of type 2 diabetes mellitus development in obese patients: a pilot study

Catanzaro, Giuseppina; Conte, Federica; Trocchianesi, Sofia; Splendiani, Elena; Bimonte, Viviana Maria; Mocini, Edoardo; Filardi, Tiziana; Po, Agnese; Besharat, Zein Mersini; Gentile, Maria Cristina; Paci, Paola; Morano, Susanna; Migliaccio, Silvia; Ferretti, Elisabetta - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 19496- - issn: 2045-2322 - wos: WOS:001106459000065 (3) - scopus: 2-s2.0-85176149771 (2)

11573/1692563 - 2023 - Bioinformatics analyses to identify molecular gene signatures associated with breast cancer phenotypes

Conte, F.; Fiscon, G.; Paci, P. - 04b Atto di convegno in volume

congresso: 8th National Congress of Bioengineering, GNB 2023 (ita)

libro: Convegno Nazionale di Bioingegneria - (9788855580113)

11573/1692565 - 2023 - A network-based algorithm for identifying drug repurposing opportunities for complex diseases

Fiscon, G.; Conte, F.; Paci, P. - 04b Atto di convegno in volume

congresso: 8th National Congress of Bioengineering, GNB 2023 (Padova)

libro: Convegno Nazionale di Bioingegneria - (9788855580113)

11573/1686599 - 2023 - Circular RNA mediated gene regulation in human breast cancer: A bioinformatics analysis

Fiscon, G.; Funari, A.; Paci, P. - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:001056751200046 (2) - scopus: 2-s2.0-85165925723 (2)

11573/1707637 - 2023 - Network-based analysis to uncover drug-induced adverse side-effects

Funari, A.; Paci, P.; Conte, F. - 04b Atto di convegno in volume

congresso: IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 (Istanbul, Turkey)

libro: Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 - ()

11573/1696499 - 2023 - The long story of SWIM methodology: from grapevine to personalised medicine

Paci, P. - 04b Atto di convegno in volume

congresso: 8th National Congress of Bioengineering, GNB 2023 (ita)

libro: Proceedings of the 8th National Congress of Bioengineering, GNB 2023 - ()

11573/1706190 - 2023 - A single-cell transcriptomic analysis of Neuroblastomas revealed a selective cGAS-STING pathway suppression in malignant cells

Sibilio, Pasquale; Di Giulio, Stefano; Funari, Alessio; Paci, Paola; Veschi, Veronica; Giannini, Giuseppe - 04b Atto di convegno in volume

congresso: 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 (Istanbul)

libro: PROCEEDINGS IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE - ()

11573/1699203 - 2023 - Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors

Vernocchi, P.; Marangelo, C.; Guerrera, S.; Del Chierico, F.; Guarrasi, V.; Gardini, S.; Conte, F.; Paci, P.; Ianiro, G.; Gasbarrini, A.; Vicari, S.; Putignani, L. - 01a Articolo in rivista

rivista: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. 1287350- - issn: 1664-302X - wos: (0) - scopus: 2-s2.0-85181223184 (1)

11573/1677782 - 2023 - A Network of MicroRNAs and mRNAs Involved in Melanosome Maturation and Trafficking Defines the Lower Response of Pigmentable Melanoma Cells to Targeted Therapy

Vitiello, M.; Mercatanti, A.; Podda, M. S.; Baldanzi, C.; Prantera, A.; Sarti, S.; Rizzo, M.; Salvetti, A.; Conte, F.; Fiscon, G.; Paci, P.; Poliseno, L. - 01a Articolo in rivista

rivista: CANCERS (Basel: MDPI) pp. - - issn: 2072-6694 - wos: WOS:000929310400001 (1) - scopus: 2-s2.0-85147887478 (1)

11573/1699206 - 2023 - Hepatitis B Virus and microRNAs: A Bioinformatics Approach

Zulian, V.; Fiscon, G.; Paci, P.; Garbuglia, A. R. - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel (Matthaeustrasse 11) : Molecular Diversity Preservation International MDPI) pp. - - issn: 1661-6596 - wos: WOS:001130716500001 (0) - scopus: 2-s2.0-85180687476 (0)

11573/1702301 - 2023 - Overview of bioinformatic tools to study viral infections

Zulian, V.; Garbuglia, A. R.; Fiscon, G.; Paci, P. - 04b Atto di convegno in volume

congresso: IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 (Istanbul, Turchia)

libro: Proceedings - 2023 2023 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023 - (979-8-3503-3749-5)

11573/1652368 - 2022 - Repurposing Histaminergic Drugs in Multiple Sclerosis

Amadio, Susanna; Conte, Federica; Esposito, Giorgia; Fiscon, Giulia; Paci, Paola; Volonté, Cinzia - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 1-16 - issn: 1422-0067 - wos: WOS:000808722700001 (3) - scopus: 2-s2.0-85131336481 (5)

11573/1617446 - 2022 - Mining sponge phenomena in RNA expression data

Angiulli, F.; Colombo, T.; Fassetti, F.; Furfaro, A.; Paci, P. - 01a Articolo in rivista

rivista: JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (World Scientific) pp. 2150022- - issn: 0219-7200 - wos: WOS:000767999800001 (0) - scopus: 2-s2.0-85120422554 (0)

11573/1570708 - 2022 - Convolutional neural networks for automated classification of prostate multiparametric magnetic resonance imaging based on image quality

Cipollari, S.; Guarrasi, V.; Pecoraro, M.; Bicchetti, M.; Messina, E.; Farina, L.; Paci, P.; Catalano, C.; Panebianco, V. - 01a Articolo in rivista

rivista: JOURNAL OF MAGNETIC RESONANCE IMAGING (-Attuale:JOHN WILEY & SONS INC, 111 RIVER ST, HOBOKEN, USA, NJ, 07030 -Lippincott, Williams & Wilkins:530 Walnut Street:Philadelphia, PA 19106:(800)638-3030, (301)223-2300, EMAIL: orders@lww.com, INTERNET: http://www.lww.com, Fax: (301)223-2320, (301)223-2320) pp. - - issn: 1053-1807 - wos: WOS:000683168200001 (11) - scopus: 2-s2.0-85112637620 (15)

11573/1660643 - 2022 - Alzheimer’s disease: insights from a network medicine perspective

Conte, F.; Paci, P. - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. - - issn: 2045-2322 - wos: WOS:000865124900003 (2) - scopus: 2-s2.0-85139571604 (2)

11573/1650660 - 2022 - StaRTrEK:in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition

Conte, F.; Papa, F.; Paci, P.; Farina, L. - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000798335400001 (0) - scopus: 2-s2.0-85130337452 (0)

11573/1660543 - 2022 - A Transcriptome- and Interactome-Based Analysis Identifies Repurposable Drugs for Human Breast Cancer Subtypes

Conte, F.; Sibilio, P.; Fiscon, G.; Paci, P. - 01a Articolo in rivista

rivista: SYMMETRY (Basel : Molecular Diversity Preservation International) pp. 2230- - issn: 2073-8994 - wos: WOS:000881575100001 (1) - scopus: 2-s2.0-85141790008 (4)

11573/1617440 - 2022 - In silico recognition of a prognostic signature in basal-like breast cancer patients

Conte, F.; Sibilio, P.; Grimaldi, A. M.; Salvatore, M.; Paci, P.; Incoronato, M. - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000802227200035 (3) - scopus: 2-s2.0-85124680516 (5)

11573/1628524 - 2022 - A Comparison of Network-Based Methods for Drug Repurposing along with an Application to Human Complex Diseases

Fiscon, Giulia; Conte, Federica; Farina, Lorenzo; Paci, Paola - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. 1-15 - issn: 1422-0067 - wos: WOS:000781104900001 (3) - scopus: 2-s2.0-85127201482 (3)

11573/1658346 - 2022 - Identification of Potential Repurposable Drugs in Alzheimer’s Disease Exploiting a Bioinformatics Analysis

Fiscon, Giulia; Sibilio, Pasquale; Funari, Alessio; Conte, Federica; Paci, Paola - 01a Articolo in rivista

rivista: JOURNAL OF PERSONALIZED MEDICINE (Basel: MDPI AG, 2011-) pp. - - issn: 2075-4426 - wos: WOS:000873097600001 (1) - scopus: 2-s2.0-85140797311 (4)

11573/1610414 - 2022 - SWIMmeR: An R-based software to unveiling crucial nodes in complex biological networks

Paci, P.; Fiscon, G. - 01a Articolo in rivista

rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 586-588 - issn: 1367-4803 - wos: WOS:000743380100051 (8) - scopus: 2-s2.0-85120815403 (11)

11573/1634701 - 2022 - SPINNAKER: an R-based tool to highlight key RNA interactions in complex biological networks

Paci, P.; Fiscon, G. - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 1-13 - issn: 1471-2105 - wos: WOS:000791789600001 (1) - scopus: 2-s2.0-85129714354 (2)

11573/1630776 - 2022 - Comprehensive network medicine-based drug repositioning via integration of therapeutic efficacy and side effects

Paci, P.; Fiscon, G.; Conte, F.; Wang, R. -S.; Handy, D. E.; Farina, L.; Loscalzo, J. - 01a Articolo in rivista

rivista: NPJ SYSTEMS BIOLOGY AND APPLICATIONS (London : Nature Partner Journals) pp. - - issn: 2056-7189 - wos: WOS:000784137500001 (9) - scopus: 2-s2.0-85128535246 (9)

11573/1655666 - 2022 - A gene dosage‐dependent effect unveils NBS1 as both a haploinsufficient tumour suppressor and an essential gene for SHH‐medulloblastoma

Petroni, Marialaura; Fabretti, Francesca; Di Giulio, Stefano; Nicolis Di Robilant, Vittoria; La Monica, Veronica; Moretti, Marta; Belardinilli, Francesca; Bufalieri, Francesca; Coppa, Anna; Paci, Paola; Corsi, Alessandro; De Smaele, Enrico; Coni, Sonia; Canettieri, Gianluca; Di Marcotullio, Lucia; Zhao‐Qi, Wang; Giannini, Giuseppe - 01a Articolo in rivista

rivista: NEUROPATHOLOGY & APPLIED NEUROBIOLOGY (Oxford England: Blackwell Science) pp. - - issn: 1365-2990 - wos: WOS:000837995000001 (2) - scopus: 2-s2.0-85137005708 (3)

11573/1638208 - 2022 - An integrative in-silico analysis discloses a novel molecular subset of colorectal cancer possibly eligible for immune checkpoint immunotherapy

Sibilio, P.; Belardinilli, F.; Licursi, V.; Paci, P.; Giannini, G. - 01a Articolo in rivista

rivista: BIOLOGY DIRECT (London: BioMed Central) pp. 10- - issn: 1745-6150 - wos: WOS:000792626600001 (0) - scopus: 2-s2.0-85129491391 (0)

11573/1660646 - 2022 - GZMKhigh CD8+ T effector memory cells are associated with CD15high neutrophil abundance in non-metastatic colorectal tumors and predict poor clinical outcome

Tiberti, S.; Catozzi, C.; Croci, O.; Ballerini, M.; Cagnina, D.; Soriani, C.; Scirgolea, C.; Gong, Z.; He, J.; Macandog, A. D.; Nabinejad, A.; Nava Lauson, C. B.; Quinte', A.; Bertalot, G.; Petz, W. L.; Ravenda, S. P.; Licursi, V.; Paci, P.; Rasponi, M.; Rotta, L.; Fazio, N.; Ren, G.; Fumagalli-Romario, U.; Schaefer, M. H.; Campaner, S.; Lugli, E.; Nezi, L.; Manzo, T. - 01a Articolo in rivista

rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. - - issn: 2041-1723 - wos: WOS:000885370100005 (8) - scopus: 2-s2.0-85141565395 (8)

11573/1610606 - 2022 - Polymorphonuclear Myeloid-Derived Suppressor Cells Are Abundant in Peripheral Blood of Cancer Patients and Suppress Natural Killer Cell Anti-Tumor Activity

Tumino, N.; Besi, F.; Martini, S.; Di Pace, A. L.; Munari, E.; Quatrini, L.; Pelosi, A.; Fiore, P. F.; Fiscon, G.; Paci, P.; Scordamaglia, F.; Covesnon, M. G.; Bogina, G.; Mingari, M. C.; Moretta, L.; Vacca, P. - 01a Articolo in rivista

rivista: FRONTIERS IN IMMUNOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. 1-12 - issn: 1664-3224 - wos: WOS:000750661400001 (17) - scopus: 2-s2.0-85123914296 (18)

11573/1660648 - 2022 - Gut Microbiota Ecology and Inferred Functions in Children With ASD Compared to Neurotypical Subjects

Vernocchi, P.; Ristori, M. V.; Guerrera, S.; Guarrasi, V.; Conte, F.; Russo, A.; Lupi, E.; Albitar-Nehme, S.; Gardini, S.; Paci, P.; Ianiro, G.; Vicari, S.; Gasbarrini, A.; Putignani, L. - 01a Articolo in rivista

rivista: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-302X - wos: WOS:000815021400001 (14) - scopus: 2-s2.0-85133495447 (15)

11573/1586465 - 2021 - Transcriptomics and metabolomics integration reveals redox-dependent metabolic rewiring in breast cancer cells

Bonanomi, M.; Salmistraro, N.; Fiscon, G.; Conte, F.; Paci, P.; Bravata, V.; Forte, G. I.; Volpari, T.; Scorza, M.; Mastroianni, F.; D'errico, S.; Avolio, E.; Piccialli, G.; Colangelo, A. M.; Vanoni, M.; Gaglio, D.; Alberghina, L. - 01a Articolo in rivista

rivista: CANCERS (Basel: MDPI) pp. - - issn: 2072-6694 - wos: WOS:000712235600001 (8) - scopus: 2-s2.0-85116768024 (9)

11573/1568587 - 2021 - An Overview of the computational models dealing with the regulatory ceRNA mechanism and ceRNA deregulation in cancer

Conte, F.; Fiscon, G.; Sibilio, P.; Licursi, V.; Paci, P. - 02a Capitolo o Articolo

libro: Methods in Molecular Biology - (978-1-0716-1502-7; 978-1-0716-1503-4)

11573/1570715 - 2021 - Drug Repurposing: A Network-based Approach to Amyotrophic Lateral Sclerosis

Fiscon, G.; Conte, F.; Amadio, S.; Volonte, C.; Paci, P. - 01a Articolo in rivista

rivista: NEUROTHERAPEUTICS (Orlando, FL: Elsevier, c2007-) pp. 1678-1691 - issn: 1933-7213 - wos: WOS:000650130300001 (19) - scopus: 2-s2.0-85105922924 (25)

11573/1521475 - 2021 - SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19

Fiscon, G.; Conte, F.; Farina, L.; Paci, P. - 01a Articolo in rivista

rivista: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. - - issn: 1553-734X - wos: WOS:000617972500002 (58) - scopus: 2-s2.0-85102213208 (65)

11573/1540720 - 2021 - SAveRUNNER: an R-based tool for drug repurposing

Fiscon, G.; Paci, P. - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000632880100002 (32) - scopus: 2-s2.0-85103179032 (41)

11573/1570702 - 2021 - Gene network analysis using SWIM reveals interplay between the transcription factor-encoding genes HMGA1, FOXM1, and MYBL2 in triple-negative breast cancer

Fiscon, G.; Pegoraro, S.; Conte, F.; Manfioletti, G.; Paci, P. - 01a Articolo in rivista

rivista: FEBS LETTERS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 1569-1586 - issn: 0014-5793 - wos: WOS:000644563100001 (12) - scopus: 2-s2.0-85107827962 (12)

11573/1570698 - 2021 - Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19

Fiscon, G.; Salvadore, F.; Guarrasi, V.; Garbuglia, A. R.; Paci, P. - 01a Articolo in rivista

rivista: COMPUTERS IN BIOLOGY AND MEDICINE (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. 104657- - issn: 0010-4825 - wos: WOS:000687867000002 (8) - scopus: 2-s2.0-85110640723 (8)

11573/1490308 - 2021 - Gene co-expression in the interactome: moving from correlation toward causation via an integrated approach to disease module discovery

Paci, P.; Fiscon, G.; Conte, F.; Wang, R. -S.; Farina, L.; Loscalzo, J. - 01a Articolo in rivista

rivista: NPJ SYSTEMS BIOLOGY AND APPLICATIONS (London : Nature Partner Journals) pp. - - issn: 2056-7189 - wos: WOS:000609636500001 (58) - scopus: 2-s2.0-85099969496 (60)

11573/1582144 - 2021 - Network analysis integrating microRNA expression profiling with MRI biomarkers and clinical data for prostate cancer early detection: a proof of concept study

Panebianco, Valeria; Paci, Paola; Pecoraro, Martina; Conte, Federica; Carnicelli, Giorgia; Besharat, Zein Mersini; Catanzaro, Giuseppina; Splendiani, Elena; Sciarra, Alessandro; Farina, Lorenzo; Catalano, Carlo; Ferretti, Elisabetta - 01a Articolo in rivista

rivista: BIOMEDICINES (Basel : MDPI) pp. - - issn: 2227-9059 - wos: WOS:000716259400001 (7) - scopus: 2-s2.0-85118267350 (5)

11573/1565163 - 2021 - The role of FOSL1 in stem-like cell reprogramming processes

Pecce, V.; Verrienti, A.; Fiscon, G.; Sponziello, M.; Conte, F.; Abballe, L.; Durante, C.; Farina, L.; Filetti, S.; Paci, P. - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 1-11 - issn: 2045-2322 - wos: WOS:000675839600007 (11) - scopus: 2-s2.0-85110912612 (13)

11573/1557582 - 2021 - SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups

Petti, M.; Verrienti, A.; Paci, P.; Farina, L. - 01a Articolo in rivista

rivista: COMPUTERS IN BIOLOGY AND MEDICINE (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. - - issn: 0010-4825 - wos: WOS:000687787500005 (4) - scopus: 2-s2.0-85108430730 (4)

11573/1586459 - 2021 - Integro-differential approach for modeling the COVID-19 dynamics - Impact of confinement measures in Italy

Salvadore, F.; Fiscon, G.; Paci, P. - 01a Articolo in rivista

rivista: COMPUTERS IN BIOLOGY AND MEDICINE (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. - - issn: 0010-4825 - wos: WOS:000734613800005 (4) - scopus: 2-s2.0-85118490834 (5)

11573/1568674 - 2021 - Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside

Sarno, F.; Benincasa, G.; List, M.; Barabasi, A. -L.; Baumbach, J.; Ciardiello, F.; Filetti, S.; Glass, K.; Loscalzo, J.; Marchese, C.; Maron, B. A.; Paci, P.; Parini, P.; Petrillo, E.; Silverman, E. K.; Verrienti, A.; Altucci, L.; Napoli, C. - 01g Articolo di rassegna (Review)

rivista: CLINICAL EPIGENETICS (Berlin : Springer) pp. 66-103 - issn: 1868-7083 - wos: WOS:000636238100001 (30) - scopus: 2-s2.0-85103380934 (33)

11573/1564553 - 2021 - In silico drug repurposing in COVID-19. A network-based analysis

Sibilio, Pasquale; Bini, Simone; Fiscon, Giulia; Sponziello, Marialuisa; Conte, Federica; Pecce, Valeria; Durante, Cosimo; Paci, Paola; Falcone, Rosa; Norata, Giuseppe Danilo; Farina, Lorenzo; Verrienti, Antonella - 01a Articolo in rivista

rivista: BIOMÉDECINE & PHARMACOTHÉRAPIE (Paris: Editions Scientifique & Medical Elsevier) pp. 1-10 - issn: 0753-3322 - wos: WOS:000696935100002 (12) - scopus: 2-s2.0-85111776839 (16)

11573/1586463 - 2021 - Polymorphonuclear myeloid-derived suppressor cells impair the anti-tumor efficacy of gd2.car t-cells in patients with neuroblastoma

Tumino, N.; Weber, G.; Besi, F.; Del Bufalo, F.; Bertaina, V.; Paci, P.; Quatrini, L.; Antonucci, L.; Sinibaldi, M.; Quintarelli, C.; Maggi, E.; De Angelis, B.; Locatelli, F.; Moretta, L.; Vacca, P.; Caruana, I. - 01f Lettera, Nota

rivista: JOURNAL OF HEMATOLOGY & ONCOLOGY (London : BioMed Central) pp. 1-7 - issn: 1756-8722 - wos: WOS:000717994400001 (31) - scopus: 2-s2.0-85118988054 (36)

11573/1399216 - 2020 - Clinical Multigene Panel Sequencing Identifies Distinct Mutational Association Patterns in Metastatic Colorectal Cancer

Belardinilli, Francesca; Capalbo, Carlo; Malapelle, Umberto; Pisapia, Pasquale; Raimondo, Domenico; Milanetti, Edoardo; Mahdavian, Yasaman; Liccardi, Carlotta; Paci, Paola; Sibilio, Pasquale; Pepe, Francesco; Bonfiglio, Caterina; Mezi, Silvia; Magri, Valentina; Coppa, Anna; Nicolussi, Arianna; Gradilone, Angela; Petroni, Marialaura; Di Giulio, Stefano; Fabretti, Francesca; Infante, Paola; Coni, Sonia; Canettieri, Gianluca; Troncone, Giancarlo; Giannini, Giuseppe - 01a Articolo in rivista

rivista: FRONTIERS IN ONCOLOGY (Lausanne : Frontiers Editorial Office, 2011-) pp. - - issn: 2234-943X - wos: WOS:000536940500001 (10) - scopus: 2-s2.0-85085205712 (10)

11573/1329897 - 2020 - A paradigm shift in medicine: a comprehensive review of network-based approaches

Conte, F.; Fiscon, G.; Licursi, V.; Bizzarri, D.; D'anto, T.; Farina, L.; Paci, P. - 01g Articolo di rassegna (Review)

rivista: BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS (Amsterdam-UK : Elsevier) pp. - - issn: 1874-9399 - wos: WOS:000528165200002 (51) - scopus: 2-s2.0-85070199010 (61)

11573/1570717 - 2020 - Disruption of redox homeostasis for combinatorial drug eefficacy in K-Ras tumors as revealed by metabolic connectivity proling

Gaglio, Daniela; Bonanomi, Marcella; Valtorta, Silvia; Bharat, Rohit; Ripamonti, Marilena; Conte, Federica; Fiscon, Giulia; Righi, Nicole; Napodano, Elisabetta; Papa, Federico; Raccagni, Isabella; Parker, Seth J.; Cifola, Ingrid; Camboni, Tania; Paci, Paola; Maria Colangelo, Anna; Vanoni, Marco; Metallo, Christian M.; Maria Moresco, Rosa; Alberghina, Lilia - 01a Articolo in rivista

rivista: CANCER & METABOLISM (London, UK: BioMed Central) pp. 1-15 - issn: 2049-3002 - wos: WOS:000576836900001 (9) - scopus: (0)

11573/1454870 - 2020 - The new paradigm of Network Medicine to analyse breast cancer phenotypes

Maria Grimaldi, Anna; Conte, Federica; Pane, Katia; Fiscon, Giulia; Mirabelli, Peppino; Baselice, Simona; Giannatiempo, Rosa; Messina, Francesco; Franzese, Monica; Salvatore, Marco; Paci, Paola; Mariarosaria Incoronato, And - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel: MDPI Center) pp. - - issn: 1422-0067 - wos: WOS:000580205600001 (19) - scopus: 2-s2.0-85090561001 (22)

11573/1365548 - 2020 - Integrated transcriptomic correlation network analysis identifies COPD molecular determinants

Paci, Paola; Fiscon, Giulia; Conte, Federica; Licursi, Valerio; Morrow, Jarrett; Hersh, Craig; Cho, Michael; Castaldi, Peter; Glass, Kimberly; Silverman, Edwin K.; Farina, Lorenzo - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. - - issn: 2045-2322 - wos: WOS:000551092600001 (27) - scopus: 2-s2.0-85085713157 (31)

11573/1392413 - 2020 - Prostate cancer screening research can benefit from network medicine: an emerging awareness

Panebianco, Valeria; Pecoraro, Martina; Fiscon, Giulia; Paci, Paola; Farina, Lorenzo; Catalano, Carlo - 01a Articolo in rivista

rivista: NPJ SYSTEMS BIOLOGY AND APPLICATIONS (London : Nature Partner Journals) pp. - - issn: 2056-7189 - wos: WOS:000531700600001 (15) - scopus: 2-s2.0-85084385544 (19)

11573/1476293 - 2020 - Human Papillomavirus infections in cervical samples from HIV-positive women: evaluation of the presence of the nonavalent HPV genotypes and genetic diversity

Sias, C.; Guarrasi, V.; Minosse, C.; Lapa, D.; Nonno, F. D.; Capobianchi, M. R.; Garbuglia, A. R.; Del Porto, P.; Paci, P. - 01a Articolo in rivista

rivista: FRONTIERS IN MICROBIOLOGY (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-302X - wos: WOS:000596563700001 (2) - scopus: 2-s2.0-85097398562 (4)

11573/1390780 - 2020 - Molecular networks in Network Medicine: Development and applications

Silverman, E. K.; Schmidt, H. H. H. W.; Anastasiadou, E.; Altucci, L.; Angelini, M.; Badimon, L.; Balligand, J. -L.; Benincasa, G.; Capasso, G.; Conte, F.; Di Costanzo, A.; Farina, L.; Fiscon, G.; Gatto, L.; Gentili, M.; Loscalzo, J.; Marchese, C.; Napoli, C.; Paci, P.; Petti, M.; Quackenbush, J.; Tieri, P.; Viggiano, D.; Vilahur, G.; Glass, K.; Baumbach, J. - 01g Articolo di rassegna (Review)

rivista: WILEY INTERDISCIPLINARY REVIEWS. SYSTEMS BIOLOGY AND MEDICINE (Hoboken, NJ : John Wiley & Sons) pp. - - issn: 1939-5094 - wos: WOS:000526598700001 (110) - scopus: 2-s2.0-85083637278 (126)

11573/1476296 - 2020 - Network analysis of gut microbiome and metabolome to discover microbiota-linked biomarkers in patients affected by non-small cell lung cancer

Vernocchi, P.; Gili, T.; Conte, F.; Del Chierico, F.; Conta, G.; Miccheli, A.; Botticelli, A.; Paci, P.; Caldarelli, G.; Nuti, M.; Marchetti, P.; Putignani, L. - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (Basel (Matthaeustrasse 11) : Molecular Diversity Preservation International MDPI) pp. 1-19 - issn: 1661-6596 - wos: WOS:000594190700001 (68) - scopus: 2-s2.0-85096204861 (71)

11573/1224164 - 2019 - A simplified genomic profiling approach predicts outcome in metastatic colorectal cancer

Capalbo, Carlo; Belardinilli, Francesca; Raimondo, Domenico; Milanetti, Edoardo; Malapelle, Umberto; Pisapia, Pasquale; Magri, Valentina; Prete, Alessandra; Pecorari, Silvia; Colella, Mariarosaria; Coppa, Anna; Bonfiglio, Caterina; Nicolussi, Arianna; Valentini, Virginia; Tessitore, Alessandra; Cardinali, Beatrice; Petroni, Marialaura; Infante, Paola; Santoni, Matteo; Filetti, Marco; Colicchia, Valeria; Paci, Paola; Mezi, Silvia; Longo, Flavia; Cortesi, Enrico; Marchetti, Paolo; Troncone, Giancarlo; Bellavia, Diana; Canettieri, Gianluca; Giannini, Giuseppe - 01a Articolo in rivista

rivista: CANCERS (Basel: MDPI) pp. - - issn: 2072-6694 - wos: WOS:000460747200021 (9) - scopus: 2-s2.0-85061991505 (9)

11573/1256896 - 2019 - BRAF V600E -mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib clinical response

Falcone, Rosa; Conte, Federica; Fiscon, Giulia; Pecce, Valeria; Sponziello, Marialuisa; Durante, Cosimo; Farina, Lorenzo; Filetti, Sebastiano; Paci, Paola; Verrienti, Antonella - 01a Articolo in rivista

rivista: ENDOCRINE (New York, Berlin: Springer Totowa, NJ: Humana Press Incorporated Basingstoke : Macmillan, 1994-) pp. 406-413 - issn: 1355-008X - wos: WOS:000468840200023 (28) - scopus: 2-s2.0-85062774724 (30)

11573/1259528 - 2019 - Identification of Disease-miRNA networks across different cancer types using SWIM

Fiscon, Giulia; Conte, Federica; Farina, Lorenzo; Pellegrini, Marco; Russo, Francesco; Paci, Paola - 02a Capitolo o Articolo

libro: MicroRNA Target Identication: Methods and Protocols - (978-1-4939-9206-5; 978-1-4939-9207-2)

11573/1369934 - 2019 - Genetic, epigenetic and genomic effects on variation of gene expression among grape varieties

Gabriele, Magris; Gabriele Di, Gaspero; Fabio, Marroni; Sara, Zenoni; Giovanni, Battista Tornielli; Mirko, Celii; Emanuele De, Paoli; Mario, Pezzotti; Federica, Conte; Paci, P; Michele, Morgante - 01a Articolo in rivista

rivista: PLANT JOURNAL (Oxford : Blackwell Science) pp. 895-909 - issn: 1365-313X - wos: WOS:000483586500007 (13) - scopus: 2-s2.0-85067834603 (19)

11573/1330755 - 2019 - MIENTURNET: An interactive web tool for microRNA-target enrichment and network-based analysis

Licursi, V.; Conte, F.; Fiscon, G.; Paci, P. - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 545- - issn: 1471-2105 - wos: WOS:000494652100001 (192) - scopus: 2-s2.0-85074548656 (197)

11573/1369940 - 2019 - miR-96-5p targets PTEN expression affecting radio-chemosensitivity of HNSCC cells

Mahrou, Vahabi; Claudio, Pulito; Andrea, Sacconi; Sara, Donzelli; Marco, D'andrea; Valentina, Manciocco; Raul, Pellini; Paci, P; Giuseppe, Sanguineti; Lidia, Strigari; Giuseppe, Spriano; Paolamuti, ; Pier Paolo, Pandol; Sabrina, Strano; Shahrokh Safarian, ; Federica, Ganci; Giovanni, Blandino - 01a Articolo in rivista

rivista: JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH (London : BioMed Central) pp. - - issn: 1756-9966 - wos: WOS:000462962800002 (54) - scopus: 2-s2.0-85063748306 (55)

11573/1219880 - 2019 - JARID1B expression and its function in DNA damage repair are tightly regulated by miRNAs in breast cancer

Mocavini, Ivano; Pippa, Simone; Licursi, Valerio; Paci, Paola; Trisciuoglio, Daniela; Mannironi, Cecilia; Presutti, Carlo; Negri, Rodolfo - 01a Articolo in rivista

rivista: CANCER SCIENCE (Tokyo : Japanese Cancer Association) pp. 1232-1243 - issn: 1349-7006 - wos: WOS:000467640800010 (20) - scopus: 2-s2.0-85063872530 (21)

11573/1259532 - 2019 - Network Inference and Reconstruction in Bioinformatics

Tieri, Paolo; Farina, Lorenzo; Petti, Manuela; Astolfi, Laura; Paci, Paola; Castiglione, Filippo - 02a Capitolo o Articolo

libro: Encyclopedia of Bioinformatics and Computational Biology - (9780128114322; 978-012811414-8)

11573/1379649 - 2018 - Prediction of response to vemurafenib in BRAF V600E mutant cancers based on a network approach

Falcone, R.; Paci, P.; Verrienti, A.; Fiscon, G.; Sponziello, M.; Conte, F.; Pecce, V.; Rosignolo, F.; Grani, G.; Lamartina, L.; Ramundo, V.; Durante, C.; Farina, L.; Filetti, S. - 01a Articolo in rivista

rivista: ANNALS OF ONCOLOGY (London; Dordrecht; Boston: Kluwer Academic Publishers) pp. viii667-viii668 - issn: 0923-7534 - wos: WOS:000459277304251 (0) - scopus: (0)

11573/1161049 - 2018 - A feature-based integrated scoring scheme for cell cycle-regulated genes prioritization

Farina, Lorenzo; Paola, Paci; Paci, Paola - 01a Articolo in rivista

rivista: JOURNAL OF THEORETICAL BIOLOGY (-Oxford, United Kingdom:Elsevier Science Limited -London, New York, Academic Press, 1961-) pp. 130-141 - issn: 0022-5193 - wos: WOS:000451361000012 (0) - scopus: 2-s2.0-85054181241 (0)

11573/1287522 - 2018 - Computational identification of specific genes for glioblastoma stem-like cells identity

Fiscon, G.; Conte, F.; Licursi, V.; Nasi, S.; Paci, P. - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 1-10 - issn: 2045-2322 - wos: WOS:000432339200001 (40) - scopus: 2-s2.0-85047239443 (40)

11573/1161047 - 2018 - Network-based approaches to explore complex biological systems towards network medicine

Fiscon, Giulia; Conte, Federica; Farina, Lorenzo; Paola, Paci; Paci, Paola - 01g Articolo di rassegna (Review)

rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000448398700018 (51) - scopus: 2-s2.0-85053058635 (55)

11573/1369822 - 2018 - SWIM tool application to expression data of glioblastoma stem-like cell lines, corresponding primary tumors and conventional glioma cell lines

Fiscon, Giulia; Conte, Federica; Paci, P - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000451686100009 (25) - scopus: 2-s2.0-85057561029 (26)

11573/1369717 - 2018 - Interplay between long non-coding RNAs and microRNAs in cancer

Francesco, Russo; Fiscon, Giulia; Conte, Federica; Milena, Rizzo; Paci, P; Marco, Pellegrini - 02a Capitolo o Articolo

libro: Computational Cell Biology: Methods and Protocols - (978-1-4939-8617-0; 978-1-4939-8618-7)

11573/1369742 - 2018 - Inverse Problems in Systems Biology: A Critical Review

Guzzi, R; Colombo, T; Paci, P - 02a Capitolo o Articolo

libro: Systems Biology - (978-1-4939-7456-6)

11573/1281623 - 2018 - Gut microbiota signatures in cystic fibrosis. Loss of host CFTR function drives the microbiota enterophenotype

Vernocchi, P.; Chierico, F. D.; Russo, A.; Majo, F.; Rossitto, M.; Valerio, M.; Casadei, L.; Storia, A. L.; De Filippis, F.; Rizzo, C.; Manetti, C.; Paci, P.; Ercolini, D.; Marini, F.; Fiscarelli, E. V.; Dallapiccola, B.; Lucidi, V.; Miccheli, A.; Putignani, L. - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. 1-23 - issn: 1932-6203 - wos: WOS:000452307600029 (65) - scopus: 2-s2.0-85057951344 (76)

11573/944027 - 2017 - Role of the long non-coding RNA PVT1 in the dysregulation of the ceRNA-ceRNA network in human breast cancer

Conte, Federica; Fiscon, Giulia; Chiara, Matteo; Colombo, Teresa; Farina, Lorenzo; Paci, Paola - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. 1-22 - issn: 1932-6203 - wos: WOS:000394244300035 (89) - scopus: 2-s2.0-85012253754 (96)

11573/866827 - 2017 - Gut microbiota profiling of pediatric nonalcoholic fatty liver disease and obese patients unveiled by an integrated meta-omics-based approach

Del Chierico, Federica; Nobili, Valerio; Vernocchi, Pamela; Russo, Alessandra; Stefanis, Cristiano De; Gnani, Daniela; Furlanello, Cesare; Zandonà, Alessandro; Paci, Paola; Capuani, Giorgio; Dallapiccola, Bruno; Miccheli, Alfredo; Alisi, Anna; Putignani, Lorenza - 01a Articolo in rivista

rivista: HEPATOLOGY (John Wiley & Sons Philadelphia, PA : W.B. Saunders) pp. 451-464 - issn: 1527-3350 - wos: WOS:000397300700009 (453) - scopus: 2-s2.0-84971663701 (501)

11573/1369856 - 2017 - Ripening Transcriptomic Program in Red and White Grapevine Varieties Corre- lates with Berry Skin Anthocyanin Accumulation

Massonnet, M; Fasoli, M; Tornielli, Gb; Altieri, M; Sandri, M; Zuccolotto, P; Paci, P; Gardiman, M; Zenoni, S; And Pezzotti, M - 01a Articolo in rivista

rivista: PLANT PHYSIOLOGY (Chicago] : American Society of Plant Physiologists, 1926-) pp. 2376-2396 - issn: 1532-2548 - wos: WOS:000406865900031 (90) - scopus: 2-s2.0-85026834756 (88)

11573/952745 - 2017 - SWIM: A computational tool to unveiling crucial nodes in complex biological networks

Paci, Paola; Colombo, Teresa; Fiscon, Giulia; Gurtner, Aymone; Pavesi, Giulio; Farina, Lorenzo - 01a Articolo in rivista

rivista: SCIENTIFIC REPORTS (London: Springer Nature London: Nature Publishing Group) pp. 44797- - issn: 2045-2322 - wos: WOS:000396891000001 (49) - scopus: 2-s2.0-85016043300 (57)

11573/1044994 - 2017 - The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex

Verduci, Lorena; Ferraiuolo, Maria; Sacconi, Andrea; Ganci, Federica; Vitale, Jlenia; Colombo, Teresa; Paci, Paola; Strano, Sabrina; Macino, Giuseppe; Rajewsky, Nikolaus; Blandino, Giovanni - 01a Articolo in rivista

rivista: GENOME BIOLOGY (BioMed Central) pp. 237- - issn: 1474-760X - wos: WOS:000418815900002 (176) - scopus: 2-s2.0-85038639025 (175)

11573/1369772 - 2016 - Distinct transcriptome responses to water limitation in isohydric and anisohydric grapevine cultivars

Dal Santo, S; Palliotti, A; Zenoni, S; Tornielli, Gb; Fasoli, M; Paci, P; Tombesi, S; Frioni, T; Silvestroni, O; Bellincontro, A; D'onofrio, C; Matarese, F; Gatti, M; Poni, S And Pezzotti M - 01a Articolo in rivista

rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. - - issn: 1471-2164 - wos: WOS:000385873200003 (35) - scopus: 2-s2.0-84992205909 (48)

11573/1369711 - 2016 - Integrated network analysis for studying human lung squamous cell carcinoma

Fiscon, G; Conte, F; Colombo, T; Farina, L; Paci, P - 04b Atto di convegno in volume

congresso: GNB2016 (Napoli; Italy)

libro: Proceeding of GNB2016 2016, section: Bioinformatica - (978-88-941906-0-1)

11573/1369919 - 2016 - A perspective on the algorithms predicting and evaluating the RNA secondary structure

Fiscon, G; Iannello, G; Paci, P - 01a Articolo in rivista

rivista: JOURNAL OF GENETICS AND GENOME RESEARCH (Newark, DE : Science Resource Online LLC 2014-) pp. - - issn: 2378-3648 - wos: (0) - scopus: (0)

11573/1369899 - 2016 - Ultrasensitive HCV RNA quantification in antiviral triple therapy: new insight on viral clearance dynamics and treatment outcome predictors

Garbuglia, Ar; Visco-Comandini, U; Lionetti, R; Lapa, D; Castiglione, F; D’Offizi, G; Taibi, C; Montalbano, M; Capobianchi, Mr; Paci, P - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000382258600003 (5) - scopus: 2-s2.0-84990070312 (4)

11573/1369865 - 2016 - Mutant p53 inhibits miRNA biogenesis by interfering with the Microprocessor complex

Gurtner, A; Garibaldi, F; Falcone, E; Trisciuoglio, D; Colombo, T; Lisek, K; Walerych, D; Dal Sal, G; Paci, P; Bossi, G; And Piaggio, G - 01a Articolo in rivista

rivista: ONCOGENE (Macmillan Magazines Limited:Porters South Crinian Street, London N1 9XW United Kingdom:011 44 207 8334000, 011 44 171 8434982, Fax: 011 44 207 812358) pp. 3760-3770 - issn: 0950-9232 - wos: WOS:000380753200002 (36) - scopus: 2-s2.0-84961390703 (43)

11573/1369756 - 2016 - Are proteins just coiled cords? Local and Global analysis of Contact Maps reveals the backbone-dependent nature of proteins

Santoni, D; Paci, P; Di Paola, L And Giuliani A - 01a Articolo in rivista

rivista: CURRENT PROTEIN & PEPTIDE SCIENCE (BENTHAM SCIENCE PUBL LTD, PO BOX 1673, HILVERSUM, NETHERLANDS, 1200 BR EMAIL: benthams@emirates.net.ae, INTERNET: http://www.bentham.org, Fax: 011 971 6 5571134) pp. 26-29 - issn: 1389-2037 - wos: WOS:000365803000004 (5) - scopus: 2-s2.0-84953391022 (6)

11573/780524 - 2015 - PVT1: a rising star among oncogenic long non-coding RNAs

Colombo, Teresa; Farina, Lorenzo; Macino, Giuseppe; Paola, Paci; Paci, Paola - 01a Articolo in rivista

rivista: BIOMED RESEARCH INTERNATIONAL (London: Hindawi, [2001]-) pp. - - issn: 2314-6141 - wos: WOS:000352420400001 (196) - scopus: 2-s2.0-84926673517 (196)

11573/866867 - 2015 - Phylogenetic and metabolic tracking of gut microbiota during perinatal development.

Del Chierico, Federica; Vernocchi, Pamela; Petrucca, Andrea; Paci, Paola; Fuentes, Susana; Pratico', Giulia; Capuani, Giorgio; Masotti, Andrea; Reddel, Sofia; Russo, Alessandra; Vallone, Cristina; Salvatori, Guglielmo; Buffone, Elsa; Signore, Fabrizio; Rigon, Giuliano; Dotta, Andrea; Miccheli, Alfredo; De Vos, Willem M; Dallapiccola, Bruno; Putignani, Lorenza - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. 1-26 - issn: 1932-6203 - wos: WOS:000360613800125 (70) - scopus: 2-s2.0-84947475253 (84)

11573/655420 - 2015 - A new procedure to analyze RNA non-branching structures

Fiscon, Giulia; Paci, P.; Colombo, T.; Iannello, G. - 01a Articolo in rivista

rivista: CURRENT BIOINFORMATICS (Netherlands, BENTHAM SCIENCE PUBLISHERS) pp. 242-258 - issn: 1574-8936 - wos: WOS:000358786000002 (3) - scopus: 2-s2.0-84938570410 (4)

11573/767376 - 2015 - MONSTER v1.1: a tool to extract and search for RNA non-branching structures

Fiscon, Giulia; Paci, P.; Iannello, G. - 01a Articolo in rivista

rivista: BMC GENOMICS (London: BioMed Central, 2000-) pp. S1- - issn: 1471-2164 - wos: WOS:000358164000001 (10) - scopus: 2-s2.0-84942915471 (10)

11573/1369734 - 2015 - The clinical significance of HCV core antigen detection during Telaprevir/Peg-Interferon/Ribavirin therapy in patients with HCV 1 genotype infection

Garbuglia Anna, Rosa; Lionetti, Raffaella; Lapa, Daniele; Taibi, Chiara; Visco-Comandini, Ubaldo; Montalbano, Marzia; D'offizi, Gianpiero; Castiglione, Filippo; Capobianchi Maria, Rosaria; Paci, P - 01a Articolo in rivista

rivista: JOURNAL OF CLINICAL VIROLOGY (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 68-73 - issn: 1386-6532 - wos: WOS:000358318400016 (10) - scopus: 2-s2.0-84937819902 (11)

11573/780523 - 2015 - Kinetic effects and modeling of mRNA turnover

Palumbo, M. C.; Farina, Lorenzo; Paci, P. - 01a Articolo in rivista

rivista: WILEY INTERDISCIPLINARY REVIEWS. RNA ([Oxford]: Wiley, 2010-) pp. 327-336 - issn: 1757-7004 - wos: WOS:000352808400004 (16) - scopus: 2-s2.0-84927910089 (17)

11573/1369932 - 2014 - On the integration of protein-protein interaction networks with gene expression and 3D structural data: What can be gained?

Bertolazzi, Paola; Bock Mary, Ellen; Guerra, Concettina; Paci, P; Santoni, Daniele - 01a Articolo in rivista

rivista: THE EUROPEAN PHYSICAL JOURNAL PLUS (Heidelberg ; Berlin : Springer) pp. - - issn: 2190-5444 - wos: WOS:000338351600006 (0) - scopus: 2-s2.0-84922569671 (0)

11573/1369926 - 2014 - GIANT: A Cytoscape Plugin for Modular Networks

Cumbo, Fabio; Paci, P; Santoni, Daniele; Di Paola, Luisa; Giuliani, Alessandro - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000342591500002 (34) - scopus: 2-s2.0-84907487776 (32)

11573/541612 - 2014 - MONSTER v1.0: a novel procedure to extract and search for RNA non-branching structures

Fiscon, Giulia; Paci, P.; Colombo, T.; Iannello, G. - 04f Poster

congresso: Eleventh Annual Meeting of the Bioinformatics Italian Society (Università degli studi di Roma la Sapienza)

libro: BITS annual meeting 2014 - ()

11573/645275 - 2014 - Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer

Paci, Paola; Colombo, Teresa; Farina, Lorenzo - 01a Articolo in rivista

rivista: BMC SYSTEMS BIOLOGY (London : BioMed Central) pp. - - issn: 1752-0509 - wos: WOS:000339581100001 (203) - scopus: 2-s2.0-84904272774 (211)

11573/780521 - 2014 - Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development

Palumbo, M. C.; Zenoni, S.; Fasoli, M.; Massonet, M.; Farina, Lorenzo; Castiglione, F.; Pezzotti, M.; Paci, P. - 01a Articolo in rivista

rivista: PLANT CELL (American Society of Plant Physiologists:15501 A Monona Drive:Rockville, MD 20855:(301)251-0560, Fax: (301)279-2996) pp. 4617-4635 - issn: 1040-4651 - wos: WOS:000348646000010 (97) - scopus: 2-s2.0-84925033913 (97)

11573/1369747 - 2014 - Modules Identification in Protein Structures: The Topological and Geometrical Solutions

Tasdighian, Setareh; Di Paola, Luisa; De Ruvo, Micol; Paci, P; Santoni, Daniele; Palumbo, Pasquale; Mei, Giampiero; Di Venere, Almerinda; Giuliani, Alessandro - 01a Articolo in rivista

rivista: JOURNAL OF CHEMICAL INFORMATION AND MODELING (AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, USA, DC, 20036) pp. 159-168 - issn: 1549-9596 - wos: WOS:000330542800017 (38) - scopus: 2-s2.0-84893418609 (41)

11573/1369797 - 2013 - Emerging Role of the Fat Free Mass Preservation during Weight Loss Therapy through a Novel Advanced Bio-Impedance Device (BIA-ACC)

Canitano, N; Paci, P; Ippoliti, F - 01a Articolo in rivista

rivista: JOURNAL OF OBESITY & WEIGHT LOSS THERAPY () pp. - - issn: 2165-7904 - wos: (0) - scopus: (0)

11573/1369764 - 2013 - Protein Contact Networks: An Emerging Paradigm in Chemistry

Di Paola, L.; De Ruvo, M.; Paci, P; Santoni, D.; Giuliani, A. - 01a Articolo in rivista

rivista: CHEMICAL REVIEWS (American Chemical Society:1155 Sixteenth Street Northwest:Washington, DC 20036:(800)227-5558, EMAIL: service@acs.org, INTERNET: http://www.pubs.acs.org, Fax: (614)447-3671) pp. 1598-1613 - issn: 0009-2665 - wos: WOS:000316243600007 (194) - scopus: 2-s2.0-84875170915 (205)

11573/539449 - 2013 - Development of an algorithm to identify RNA secondary structures.

Fiscon, Giulia; Paci, P.; Colombo, T.; Iannello, G. - 04f Poster

congresso: FEBS workshop on Translating Epigenomes into Function: a Next Generation Challenge for Human Disease (Capri, Italy)

libro: FEBS workshop on Translating Epigenomes into Function: a Next Generation Challenge for Human Disease- Abstract Book - ()

11573/542064 - 2013 - STRUCTURAL ANALYSIS OF LONG NON-CODING RNAs

Fiscon, Giulia; Paci, P.; Colombo, T.; Iannello, G. - 13a Altro ministeriale

11573/1369726 - 2013 - Proteins as Netwoks: Usefulness of Graph Theory in Protein Science

Giuliani, A; Di Paola, L; Paci, P; De Ruvo, M; Arcangeli, C; Santoni, D And Celino M - 02a Capitolo o Articolo

libro: Advances in Protein and Peptide Sciences - ()

11573/1369848 - 2013 - Identifying Correlations between Chromosomal Proximity of Genes and Distance of Their Products in Protein-Protein Interaction Networks of Yeast

Santoni, Daniele; Castiglione, Filippo; Paci, P - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000316936100038 (10) - scopus: 2-s2.0-84874593799 (12)

11573/1369718 - 2012 - Characterizing protein shape by a volume distribution asymmetry index

Arrigo, N; Paci, P; Di Paola, L; Santoni, D; De Ruvo, M; Giuliani, A; Castiglione, F - 01a Articolo in rivista

rivista: THE OPEN BIOINFORMATICS JOURNAL (Hilversum : Bentham Science Publishers, Bentham Open) pp. 20-27 - issn: 1875-0362 - wos: (0) - scopus: 2-s2.0-84861919862 (3)

11573/503293 - 2012 - Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay

Cacace, Filippo; Paci, Paola; Cusimano, Valerio; Germani, Alfredo; Farina, Lorenzo - 01a Articolo in rivista

rivista: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. - - issn: 1553-7358 - wos: WOS:000311897100031 (11) - scopus: 2-s2.0-84870687141 (12)

11573/1369889 - 2012 - Shedding light on protein-ligand binding by graph theory: The topological nature of allostery

De Ruvo, M; Giuliani, A; Paci, P; Santoni, D; Di Paola, L - 01a Articolo in rivista

rivista: BIOPHYSICAL CHEMISTRY (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 21-29 - issn: 0301-4622 - wos: WOS:000304503200003 (45) - scopus: 2-s2.0-84860714372 (49)

11573/1369790 - 2012 - Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles

Di Paola, Luisa; Paci, P; Santoni, Daniele; De Ruvo, Micol; Giuliani, Alessandro - 01a Articolo in rivista

rivista: JOURNAL OF CHEMICAL INFORMATION AND MODELING (AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, USA, DC, 20036) pp. 474-482 - issn: 1549-9596 - wos: WOS:000300650400022 (25) - scopus: 2-s2.0-84857585657 (28)

11573/1369880 - 2012 - Structural and Functional Analysis of Hemoglobin and Serum Albumin Through Protein Long-Range Interaction Networks

Paci, P; Di Paola, Luisa; Santoni, Daniele; De Ruvo, Micol; Giuliani, Alessandro - 01a Articolo in rivista

rivista: CURRENTS PROTEOMICS (Bentham Science Publishers Ltd) pp. 160-166 - issn: 1570-1646 - wos: WOS:000309523000002 (12) - scopus: 2-s2.0-84867738584 (13)

11573/1369948 - 2011 - Timely HAART initiation may pave the way for a better viral control

Paci, P; Martini, Federico; Bernaschi, Massimo; D'offizi, Gianpiero; Castiglione, Filippo - 01a Articolo in rivista

rivista: BMC INFECTIOUS DISEASES (BioMed Central. London) pp. - - issn: 1471-2334 - wos: WOS:000288377200001 (19) - scopus: 2-s2.0-79952075869 (21)

11573/1369913 - 2010 - Criticality of Timing for Anti-HIV Therapy Initiation

Castiglione, F; Paci, P - 01a Articolo in rivista

rivista: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000285579200016 (3) - scopus: 2-s2.0-78650824232 (3)

11573/1369873 - 2009 - Modeling lymphocyte homing and encounters in lymph nodes

Baldazzi, V; Paci, P; Bernaschi, M; Castiglione, F - 01a Articolo in rivista

rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000272770200001 (35) - scopus: 2-s2.0-71949128697 (40)

11573/1369805 - 2009 - Immune control of HIV-1 infection after therapy interruption: immediate versus deferred antiretroviral therapy

Paci, P; Carello, R; Bernaschi, M; D'offizi, G; Castiglione, F - 01a Articolo in rivista

rivista: BMC INFECTIOUS DISEASES (BioMed Central. London) pp. - - issn: 1471-2334 - wos: WOS:000271925100001 (12) - scopus: 2-s2.0-70450225444 (12)

11573/1369832 - 2009 - ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization

Pappalardo, F; Halling-Brown, Md; Rapin, N; Zhang, P; Alemani, D; Emerson, A; Paci, P; Duroux, P; Pennisi, M; Palladini, A; Miotto, O; Churchill, D; Rossi, E; Shepherd, Aj; Moss, Ds; Castiglione, F; Bernaschi, M; Lefranc, Mp; Brunak, S; Motta, S; Lollini, Pl; Basford, Ke; Brusic, V - 01a Articolo in rivista

rivista: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals -London : Henry Stewart, 2000-) pp. 330-340 - issn: 1467-5463 - wos: WOS:000265522200011 (33) - scopus: 2-s2.0-65549157113 (37)

11573/1369713 - 2008 - A discrete/continuous model of anti-HIV response and therapy

Paci, P; Castiglione, F; Bernaschi, M; Baldazzi, V - 04b Atto di convegno in volume

congresso: UKSim 10th International Conference on Computer Modelling and Simulation (EUROSIM/UKSim) (Emmanuel Coll, Cambridge, ENGLAND)

libro: IEEE Computer Society, Digital library Proceedins UKSIM - (978-0-7695-3114-4)

11573/1369781 - 2006 - Isotope effects in the Hubbard-Holstein model within dynamical mean-field theory

Paci, P; Capone, M; Cappelluti, E; Ciuchi, S; Grimaldi, C - 01a Articolo in rivista

rivista: PHYSICAL REVIEW. B, CONDENSED MATTER AND MATERIALS PHYSICS (American Institute of Physics:2 Huntington Quadrangle, Suite 1NO1:Melville, NY 11747:(800)344-6902, (631)576-2287, EMAIL: subs@aip.org, INTERNET: http://www.aip.org, Fax: (516)349-9704) pp. - - issn: 1098-0121 - wos: WOS:000242409400018 (14) - scopus: 2-s2.0-33750875215 (13)

11573/1746 - 2005 - Relevance of multiband Jahn-Teller effects on the electron-phonon interaction in A3C60

Cappelluti, E.; Paci, P.; Grimaldi, C.; Pietronero, Luciano - 01a Articolo in rivista

11573/1730 - 2005 - Polaronic and nonadiabatic phase diagram from anomalous isotope effects

Paci, P.; Capone, M.; Cappelluti, E.; Ciuchi, S.; Grimaldi, C.; Pietronero, Luciano - 01a Articolo in rivista

rivista: PHYSICAL REVIEW LETTERS (American Institute of Physics:2 Huntington Quadrangle, Suite 1NO1:Melville, NY 11747:(800)344-6902, (631)576-2287, EMAIL: subs@aip.org, INTERNET: http://www.aip.org, Fax: (516)349-9704) pp. - - issn: 0031-9007 - wos: WOS:000226604700055 (25) - scopus: 2-s2.0-18044380292 (28)

11573/1739 - 2004 - Nonadiabatic high-Tc superconductivity in hole-doped fullerenes

Paci, P.; Cappelluti, E.; Grimaldi, C.; Pietronero, Luciano; Strassler, S. - 01a Articolo in rivista

11573/1740 - 2004 - Unconventional pairing in fullerides by nonadiabatic channels

Paci, P.; Cappelluti, E.; Grimaldi, C.; Pietronero, Luciano; Strassler, S. - 01a Articolo in rivista

rivista: PHYSICA. C, SUPERCONDUCTIVITY (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. 240-244 - issn: 0921-4534 - wos: WOS:000224051700101 (1) - scopus: 2-s2.0-4344713405 (1)

11573/1369907 - 2002 - Nonadiabatic superconductivity: from theory to materials

Paci, P - 01a Articolo in rivista

rivista: SCIENTIFICA ACTA. QUADERNI DEL DOTTORATO (Pavia : Università degli Studi di Pavia) pp. 1-141 - issn: 0394-2309 - wos: (0) - scopus: (0)

11573/1369936 - 2002 - Nonadiabatic superconductivity and vertex corrections in uncorrelated systems

Paci, P; Cappelluti, E; Grimaldi, C; Pietronero, L - 01a Articolo in rivista

11573/1369812 - 2000 - d-wave nonadiabatic superconductivity

Paci, P; Grimaldi, C; Pietronero, L - 01a Articolo in rivista

rivista: THE EUROPEAN PHYSICAL JOURNAL. B, CONDENSED MATTER PHYSICS (Les Ulis: EDP Sciences. 2000- Springer Verlag Germany:Tiergartenstrasse 17, D 69121 Heidelberg Germany:011 49 6221 3450, EMAIL: g.braun@springer.de, INTERNET: http://www.springer.de, Fax: 011 49 6221 345229) pp. 235-243 - issn: 1434-6028 - wos: WOS:000089745600006 (7) - scopus: 2-s2.0-0012405501 (11)

11573/1369840 - 2000 - s- and d-wave symmetries in nonadiabatic theory of superconductivity

Paci, P; Grimaldi, C; Pietronero, L; Cappelluti, E - 01a Articolo in rivista

rivista: INTERNATIONAL JOURNAL OF MODERN PHYSICS B (World Scientific Publishing Company:PO Box 128, Farrer Road, Singapore 912805 Singapore:011 65 6 4665775, EMAIL: journal@wspc.com.sg, INTERNET: http://www.wspc.com.sg, http://www.worldscinet.com, Fax: 011 65 6 4677667) pp. 2982-2987 - issn: 0217-9792 - wos: WOS:000166337700061 (1) - scopus: 2-s2.0-0034735041 (1)