11573/1697213 - 2023 -
Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders Iannuccelli, Marta; Vitriolo, Alessandro; Licata, Luana; Lo Surdo, Prisca; Contino, Silvia; Cheroni, Cristina; Capocefalo, Daniele; Castagnoli, Luisa; Testa, Giuseppe; Cesareni, Gianni; Perfetto, Livia - 01a Articolo in rivista
rivista: MOLECULAR PSYCHIATRY (Basingstoke: Nature Publishing Group.) pp. - - issn: 1476-5578 - wos: WOS:001129526200005 (0) - scopus: 2-s2.0-85179653018 (0)
11573/1697214 - 2023 -
The Cyclin-dependent kinase 1: more than a cell cycle regulator Massacci, Giorgia; Perfetto, Livia; Sacco, Francesca - 01g Articolo di rassegna (Review)
rivista: BRITISH JOURNAL OF CANCER (Houndmills Basingstoke Hampshire: Nature Pub. Group
London: Harcourt Publishers.) pp. 1707-1716 - issn: 1532-1827 - wos: WOS:001099067900002 (3) - scopus: 2-s2.0-85175088850 (2)
11573/1680075 - 2023 -
Impact of FLT3-ITD location on cytarabine sensitivity in AML: a network-based approach Pugliese, Giusj Monia; Venafra, Veronica; Bica, Valeria; Massacci, Giorgia; Latini, Sara; Graziosi, Simone; Fischer, Thomas; Mougiakakos, Dimitrios; Boettcher, Martin; Perfetto, Livia; Sacco, Francesca - 01a Articolo in rivista
rivista: LEUKEMIA (First or current publisher [Houndmills, Basingstoke, Hampshire, UK] : Stockton Press
Current or last publisher London : Nature Publishing Group) pp. 1151-1155 - issn: 1476-5551 - wos: WOS:000952382300001 (2) - scopus: 2-s2.0-85150617778 (2)
11573/1697215 - 2023 -
The landscape of microRNA interaction annotation: analysis of three rare disorders as a case study Simona, Panni; Panneerselvam, Kalpana; Porras, Pablo; Duesbury, Margaret; Perfetto, Livia; Licata, Luana; Hermjakob, Henning; Orchard, Sandra - 01a Articolo in rivista
rivista: DATABASE (Oxford: Oxford Journals, 2009-
Oxford,UK: Oxford University Press) pp. 1-10 - issn: 1758-0463 - wos: WOS:001081606800001 (0) - scopus: 2-s2.0-85175741233 (0)
11573/1697212 - 2023 -
The effects of pathogenic and likely pathogenic variants for inherited hemostasis disorders in 140 214 UK Biobank participants Stefanucci, L.; Collins, J.; Sims, M. C.; Barrio-Hernandez, I.; Sun, L.; Burren, O. S.; Perfetto, L.; Bender, I.; Callahan, T. J.; Fleming, K.; Guerrero, J. A.; Hermjakob, H.; Martin, M. J.; Stephenson, J.; Paneerselvam, K.; Petrovski, S.; Porras, P.; Robinson, P. N.; Wang, Q.; Watkins, X.; Frontini, M.; Laskowski, R. A.; Beltrao, P.; Di Angelantonio, E.; Gomez, K.; Laffan, M.; Ouwehand, W. H.; Mumford, A. D.; Freson, K.; Carss, K.; Downes, K.; Gleadall, N.; Megy, K.; Bruford, E.; Vuckovic, D. - 01a Articolo in rivista
rivista: BLOOD (New York: Elsevier Inc.
[Washington DC etc.]: American Society of Hematology) pp. 2055-2068 - issn: 0006-4971 - wos: WOS:001146299800001 (2) - scopus: 2-s2.0-85173962334 (3)
11573/1660183 - 2022 -
SIGNORApp: a Cytoscape 3 application to access SIGNOR data De Marinis, I; Lo Surdo, P; Cesareni, G; Perfetto, L - 01a Articolo in rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 1764-1766 - issn: 1367-4803 - wos: WOS:000756727100001 (5) - scopus: 2-s2.0-85126590934 (4)
11573/1660185 - 2022 -
The IntAct database: efficient access to fine-grained molecular interaction data Del Toro, N; Shrivastava, A; Ragueneau, E; Meldal, B; Combe, C; Barrera, E; Perfetto, L; How, K; Ratan, P; Shirodkar, G; Lu, O; Meszaros, B; Watkins, X; Pundir, S; Licata, L; Iannuccelli, M; Pellegrini, M; Martin, Mj; Panni, S; Duesbury, M; Vallet, Sd; Rappsilber, J; Ricard-Blum, S; Cesareni, G; Salwinski, L; Orchard, S; Porras, P; Panneerselvam, K; Hermjakob, H - 01a Articolo in rivista
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Information Retrieval ltd., London) pp. 648-653 - issn: 0305-1048 - wos: WOS:000743496700078 (67) - scopus: 2-s2.0-85123044845 (69)
11573/1660181 - 2022 -
A resource to infer molecular paths linking cancer mutations to perturbation of cell metabolism Iannuccelli, M; Lo Surdo, P; Licata, L; Castagnoli, L; Cesareni, G; Perfetto, L - 01a Articolo in rivista
rivista: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:000805011900001 (2) - scopus: 2-s2.0-85131520980 (2)
11573/1660175 - 2022 -
The gene regulation knowledge commons: the action area of GREEKC Kuiper, M; Bonello, J; Fernandez-Breis, Jt; Bucher, P; Futschik, Me; Gaudet, P; Kulakovskiy, Iv; Licata, L; Logie, C; Lovering, Rc; Makeev, Vj; Orchard, S; Panni, S; Perfetto, L; Sant, D; Schulz, S; Vercruysse, S; Zerbino, Dr; Laegreid, A - 01a Articolo in rivista
rivista: BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS (Amsterdam-UK : Elsevier) pp. - - issn: 1874-9399 - wos: WOS:000727751500001 (2) - scopus: 2-s2.0-85120502486 (3)
11573/1664850 - 2022 -
SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update Lo Surdo, Prisca; Iannuccelli, Marta; Contino, Silvia; Castagnoli, Luisa; Licata, Luana; Cesareni, Gianni; Perfetto, Livia - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. - - issn: 0305-1048 - wos: WOS:000868392800001 (18) - scopus: 2-s2.0-85159634044 (20)
11573/1664849 - 2022 -
A key role of the WEE1-CDK1 axis in mediating TKI-therapy resistance in FLT3-ITD positive acute myeloid leukemia patients Massacci, Giorgia; Venafra, Veronica; Latini, Sara; Bica, Valeria; Pugliese, Giusj Monia; Graziosi, Simone; Klingelhuber, Felix; Krahmer, Natalie; Fischer, Thomas; Mougiakakos, Dimitrios; Boettcher, Martin; Perfetto, Livia; Sacco, Francesca - 01a Articolo in rivista
rivista: LEUKEMIA (First or current publisher [Houndmills, Basingstoke, Hampshire, UK] : Stockton Press
Current or last publisher London : Nature Publishing Group) pp. - - issn: 1476-5551 - wos: WOS:000898331300001 (5) - scopus: 2-s2.0-85143763800 (4)
11573/1660178 - 2022 -
Complex Portal 2022: new curation frontiers Meldal, Bhm; Perfetto, L; Combe, C; Lubiana, T; Cavalcante, Jvf; Bye-A-Jee, H; Waagmeester, A; Del-Toro, N; Shrivastava, A; Barrera, E; Wong, E; Mlecnik, B; Bindea, G; Panneerselvam, K; Willighagen, E; Rappsilber, J; Porras, P; Hermjakob, H; Orchard, S - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. D578-D586 - issn: 0305-1048 - wos: WOS:000743496700070 (16) - scopus: 2-s2.0-85122997981 (18)
11573/1660163 - 2021 -
The Gene Ontology resource: enriching a GOld mine Carbon, S; Douglass, E; Good, Bm; Unni, Dr; Harris, Nl; Mungall, Cj; Basu, S; Chisholm, Rl; Dodson, Rj; Hartline, E; Fey, P; Thomas, Pd; Albou, Lp; Ebert, D; Kesling, Mj; Mi, Hy; Muruganujan, A; Huang, Xs; Mushayahama, T; Labonte, Sa; Siegele, Da; Antonazzo, G; Attrill, H; Brown, Nh; Garapati, P; Marygold, Sj; Trovisco, V; Dos Santos, G; Falls, K; Tabone, C; Zhou, Pl; Goodman, Jl; Strelets, Vb; Thurmond, J; Garmiri, P; Ishtiaq, R; Rodriguez-Lopez, M; Acencio, Ml; Kuiper, M; Laegreid, A; Logie, C; Lovering, Rc; Kramarz, B; Saverimuttu, Scc; Pinheiro, Sm; Gunn, H; Su, Rz; Thurlow, Ke; Chibucos, M; Giglio, M; Nadendla, S; Munro, J; Jackson, R; Duesbury, Mj; Del-Toro, N; Meldal, Bhm; Paneerselvam, K; Perfetto, L; Porras, P; Orchard, S; Shrivastava, A; Chang, Hy; Finn, Rd; Mitchell, Al; Rawlings, Nd; Richardson, L; Sangrador-Vegas, A; Blake, Ja; Christie, Kr; Dolan, Me; Drabkin, Hj; Hill, Dp; Ni, L; Sitnikov, Dm; Harris, Ma; Oliver, Sg; Rutherford, K; Wood, V; Hayles, J; Bahler, J; Bolton, Er; De Pons, Jl; Dwinell, Mr; Hayman, Gt; Kaldunski, Ml; Kwitek, Ae; Laulederkind, Sjf; Plasterer, C; Tutaj, Ma; Vedi, M; Wang, Sj; D'eustachio, P; Matthews, L; Balhoff, Jp; Aleksander, Sa; Alexander, Mj; Cherry, Jm; Engel, Sr; Gondwe, F; Karra, K; Miyasato, Sr; Nash, Rs; Simison, M; Skrzypek, Ms; Weng, S; Wong, Ed; Feuermann, M; Gaudet, P; Morgat, A; Bakker, E; Berardini, Tz; Reiser, L; Subramaniam, S; Huala, E; Arighi, Cn; Auchincloss, A; Axelsen, K; Argoud-Puy, G; Bateman, A; Blatter, Mc; Boutet, E; Bowler, E; Breuza, L; Bridge, A; Britto, R; Bye-A-Jee, H; Casas, Cc; Coudert, E; Denny, P; Estreicher, A; Famiglietti, Ml; Georghiou, G; Gos, A; Gruaz-Gumowski, N; Hatton-Ellis, E; Hulo, C; Ignatchenko, A; Jungo, F; Laiho, K; Le Mercier, P; Lieberherr, D; Lock, A; Lussi, Y; Macdougall, A; Magrane, M; Martin, Mj; Masson, P; Natale, Da; Hyka-Nouspikel, N; Orchard, S; Pedruzzi, I; Pourcel, L; Poux, S; Pundir, S; Rivoire, C; Speretta, E; Sundaram, S; Tyagi, N; Warner, K; Zaru, R; Wu, Ch; Diehl, Ad; Chan, Jn; Grove, C; Lee, Ryn; Muller, Hm; Raciti, D; Van Auken, K; Sternberg, Pw; Berriman, M; Paulini, M; Howe, K; Gao, S; Wright, A; Stein, L; Howe, Dg; Toro, S; Westerfield, M; Jaiswal, P; Cooper, L; Elser, J - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. 325-334 - issn: 0305-1048 - wos: WOS:000608437800042 (1135) - scopus: 2-s2.0-85099428896 (1785)
11573/1660173 - 2021 -
Assembling disease networks from causal interaction resources Cesareni, G; Sacco, F; Perfetto, L - 01g Articolo di rassegna (Review)
rivista: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-8021 - wos: WOS:000665763300001 (3) - scopus: 2-s2.0-85108874484 (3)
11573/1660187 - 2021 -
Analysing the yeast complexome-the Complex Portal rising to the challenge Meldal, Bhm; Pons, C; Perfetto, L; Del-Toro, N; Wong, E; Aloy, P; Hermjakob, H; Orchard, S; Porras, P - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. 3156-3167 - issn: 0305-1048 - wos: WOS:000642330200017 (2) - scopus: 2-s2.0-85104048201 (2)
11573/1660720 - 2021 -
Integrating patient-specific information into logic models of complex diseases: application to acute myeloid leukemia Palma, Alessandro; Iannuccelli, Marta; Rozzo, Ilaria; Licata, Luana; Perfetto, Livia; Massacci, Giorgia; Castagnoli, Luisa; Cesareni, Gianni; Sacco, Francesca - 01a Articolo in rivista
rivista: JOURNAL OF PERSONALIZED MEDICINE (Basel: MDPI AG, 2011-) pp. 1-15 - issn: 2075-4426 - wos: WOS:000622705700001 (3) - scopus: 2-s2.0-85101196769 (4)
11573/1660160 - 2021 -
A resource for the network representation of cell perturbations caused by SARS-CoV-2 infection Perfetto, L; Micarelli, E; Iannuccelli, M; Lo Surdo, P; Giuliani, G; Latini, S; Pugliese, Gm; Massacci, G; Vumbaca, S; Riccio, F; Fuoco, C; Paoluzi, S; Castagnoli, L; Cesareni, G; Licata, L; Sacco, F - 01a Articolo in rivista
rivista: GENES (Basel : Molecular Diversity Preservation International) pp. - - issn: 2073-4425 - wos: WOS:000633658000001 (5) - scopus: 2-s2.0-85103098209 (6)
11573/1660188 - 2021 -
Combining mass spectrometry-based phosphoproteomics with a network-based approach to reveal FLT3-dependent mechanisms of chemoresistance Pugliese, Gm; Latini, S; Massacci, G; Perfetto, L; Sacco, F - 01g Articolo di rassegna (Review)
rivista: PROTEOMES (Basel: MDPI) pp. - - issn: 2227-7382 - wos: WOS:000666795600001 (3) - scopus: 2-s2.0-85106693219 (3)
11573/1660177 - 2020 -
A coordinated approach by public domain bioinformatics resources to aid the fight against Alzheimer's disease through expert curation of key protein targets Breuza, L; Arighi, Cn; Argoud-Puy, G; Casals-Casas, C; Estreicher, A; Famiglietti, Ml; Georghiou, G; Gos, A; Gruaz-Gumowski, N; Hinz, U; Hyka-Nouspikel, N; Kramarz, B; Lovering, Rc; Lussi, Y; Magrane, M; Masson, P; Perfetto, L; Poux, S; Rodriguez-Lopez, M; Stoeckert, C; Sundaram, S; Wang, Ls; Wu, El; Orchard, S - 01a Articolo in rivista
rivista: JOURNAL OF ALZHEIMER'S DISEASE (Netherlands: IOS Press) pp. 257-273 - issn: 1387-2877 - wos: WOS:000568816600021 (3) - scopus: 2-s2.0-85090506903 (4)
11573/1660170 - 2020 -
CancerGeneNet: linking driver genes to cancer hallmarks Iannuccelli, M; Micarelli, E; Lo Surdo, P; Palma, A; Perfetto, L; Rozzo, I; Castagnoli, L; Licata, L; Cesareni, G - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. 416-421 - issn: 0305-1048 - wos: WOS:000525956700058 (25) - scopus: 2-s2.0-85077665376 (24)
11573/1660179 - 2020 -
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update Licata, L; Lo Surdo, P; Iannuccelli, M; Palma, A; Micarelli, E; Perfetto, L; Peluso, D; Calderone, A; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
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Information Retrieval ltd., London) pp. 504-510 - issn: 0305-1048 - wos: WOS:000525956700070 (136) - scopus: 2-s2.0-85077669355 (150)
11573/1660715 - 2020 -
The IMEx coronavirus interactome: an evolving map of Coronaviridae-host molecular interactions Perfetto, L; Pastrello, C; Del-Toro, N; Duesbury, M; Iannuccelli, M; Kotlyar, M; Licata, L; Meldal, B; Panneerselvam, K; Panni, S; Rahimzadeh, N; Ricard-Blum, S; Salwinski, L; Shrivastava, A; Cesareni, G; Pellegrini, M; Orchard, S; Jurisica, I; Hermjakob, H; Porras, P - 01a Articolo in rivista
rivista: DATABASE (Oxford: Oxford Journals, 2009-
Oxford,UK: Oxford University Press) pp. - - issn: 1758-0463 - wos: WOS:000597233700001 (22) - scopus: 2-s2.0-85096407251 (26)
11573/1660171 - 2020 -
Towards a unified open access dataset of molecular interactions Porras, P; Barrera, E; Bridge, A; Del-Toro, N; Cesareni, G; Duesbury, M; Hermjakob, H; Iannuccelli, M; Jurisica, I; Kotlyar, M; Licata, L; Lovering, Rc; Lynn, Dj; Meldal, B; Nanduri, B; Paneerselvam, K; Panni, S; Pastrello, C; Pellegrini, M; Perfetto, L; Rahimzadeh, N; Ratan, P; Ricard-Blum, S; Salwinski, L; Shirodkar, G; Shrivastava, A; Orchard, S - 01a Articolo in rivista
rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. - - issn: 2041-1723 - wos: WOS:000598900500001 (35) - scopus: 2-s2.0-85097001859 (41)
11573/1660168 - 2020 -
The minimum information about a molecular interaction CAusal STatement (MI2CAST) Toure, V; Vercruysse, S; Acencio, Ml; Lovering, Rc; Orchard, S; Bradley, G; Casals-Casas, C; Chaouiya, C; Del-Toro, N; Flobak, A; Gaudet, P; Hermjakob, H; Hoyt, Ct; Licata, L; Laegreid, A; Mungall, Cj; Niknejad, A; Panni, S; Perfetto, L; Porras, P; Pratt, D; Saez-Rodriguez, J; Thieffry, D; Thomas, Pd; Turei, D; Kuiper, M - 01a Articolo in rivista
rivista: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 5712-5718 - issn: 1367-4803 - wos: WOS:000642297800023 (7) - scopus: 2-s2.0-85094135160 (10)
11573/1660164 - 2019 -
Assessment of network module identification across complex diseases Choobdar, S; Ahsen, Me; Crawford, J; Tomasoni, M; Fang, T; Lamparter, D; Lin, Jy; Hescott, B; Hu, Xz; Mercer, J; Natoli, T; Narayan, R; Aicheler, F; Amoroso, N; Arenas, A; Azhagesan, K; Baker, A; Banf, M; Batzoglou, S; Baudot, A; Bellotti, R; Bergmann, S; Boroevich, Ka; Brun, C; Cai, S; Caldera, M; Calderone, A; Cesareni, G; Chen, Wq; Chichester, C; Cowen, L; Cui, Hz; Dao, P; De Domenico, M; Dhroso, A; Didier, G; Divine, M; Del Sol, A; Feng, Xy; Flores-Canales, Jc; Fortunato, S; Gitter, A; Gorska, A; Guan, Yf; Guenoche, A; Gomez, S; Hamza, H; Hartmann, A; He, S; Heijs, A; Heinrich, J; Hu, Y; Huang, Xq; Hughitt, Vk; Jeon, M; Jeub, L; Johnson, Nt; Joo, K; Joung, I; Jung, S; Kalko, Sg; Kamola, Pj; Kang, J; Kaveelerdpotjana, B; Kim, M; Kim, Ya; Kohlbacher, O; Korkin, D; Krzysztof, K; Kunji, K; Kutalik, Z; Lage, K; Lang-Brown, S; Le, Td; Lee, J; Lee, S; Lee, J; Li, D; Li, Jy; Liu, L; Loizou, A; Luo, Zh; Lysenko, A; Ma, Tl; Mall, R; Marbach, D; Mattia, T; Medvedovic, M; Menche, J; Micarelli, E; Monaco, A; Mueller, F; Narykov, O; Norman, T; Park, S; Perfetto, L; Perrin, D; Pirro, S; Przytycka, Tm; Qian, Xn; Raman, K; Ramazzotti, D; Ramsahai, E; Ravindran, B; Rennert, P; Saez-Rodriguez, J; Scharfe, C; Sharan, R; Shi, N; Shin, W; Shu, H; Sinha, H; Slonim, Dk; Spinelli, L; Srinivasan, S; Subramanian, A; Suver, C; Szklarczyk, D; Tangaro, S; Thiagarajan, S; Tichit, L; Tiede, T; Tripathi, B; Tsherniak, A; Tsunoda, T; Turei, D; Ullah, E; Vahedi, G; Valdeolivas, A; Vivek, J; Von Mering, C; Waagmeester, A; Wang, B; Wang, Yj; Weir, Ba; White, S; Winkler, S; Xu, K; Xu, Ts; Yan, Ch; Yang, Lq; Yu, Kx; Yu, Xt; Zaffaroni, G; Zaslavskiy, M; Zeng, T; Zhang, Jtd; Zhang, L; Zhang, Wj; Zhang, L; Zhang, Xy; Zhang, Jp; Zhou, X; Zhou, Jr; Zhu, Ht; Zhu, Jj; Zuccon, G; Stolovitzky, G; Kutalik, Z; Lage, K; Slonim, Dk; Saez-Rodriguez, J; Cowen, Lj; Bergmann, S; Marbach, D - 01a Articolo in rivista
rivista: NATURE METHODS (New York, NY : Nature Pub. Group, c2004-) pp. 843-852 - issn: 1548-7091 - wos: WOS:000484044700022 (141) - scopus: 2-s2.0-85071733655 (152)
11573/1660717 - 2019 -
Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set Del-Toro, N; Duesbury, M; Koch, M; Perfetto, L; Shrivastava, A; Ochoa, D; Wagih, O; Piñero, J; Kotlyar, M; Pastrello, C; Beltrao, P; Furlong, L I; Jurisica, I; Hermjakob, H; Orchard, S; Porras, P - 01a Articolo in rivista
rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. - - issn: 2041-1723 - wos: WOS:000454679900010 (38) - scopus: 2-s2.0-85059496699 (52)
11573/1660155 - 2019 -
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes Meldal, Bhm; Bye-A-Jee, H; Gajdos, L; Hammerova, Z; Horackova, A; Melicher, F; Perfetto, L; Pokorny, D; Lopez, Mr; Turkova, A; Wong, Ed; Xie, Zy; Casanova, Eb; Del-Toro, N; Koch, M; Porras, P; Hermjakob, H; Orchard, S - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 550-558 - issn: 0305-1048 - wos: WOS:000462587400077 (64) - scopus: 2-s2.0-85058482763 (68)
11573/1660182 - 2019 -
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen Menden, Mp; Wang, D; Mason, Mj; Szalai, B; Bulusu, Kc; Guan, Yf; Yu, T; Kang, J; Jeon, M; Wolfinger, R; Nguyen, T; Zaslavskiy, M; Jang, Is; Ghazoui, Z; Ahsen, Me; Vogel, R; Neto, Ec; Norman, T; Tang, Eky; Garnett, Mj; Di Veroli, Gy; Fawell, S; Stolovitzky, G; Guinney, J; Dry, Jr; Saez-Rodriguez, J; Abante, J; Abecassis, Bs; Aben, N; Aghamirzaie, D; Aittokallio, T; Akhtari, Fs; Al-Lazikani, B; Alam, T; Allam, A; Allen, C; De Almeida, Mp; Altarawy, D; Alves, V; Amadoz, A; Anchang, B; Antolin, Aa; Ash, Jr; Aznar, Vr; Ba-Alawi, W; Bagheri, M; Bajic, V; Ball, G; Ballester, Pj; Baptista, D; Bare, C; Bateson, M; Bender, A; Bertrand, D; Wijayawardena, B; Boroevich, Ka; Bosdriesz, E; Bougouffa, S; Bounova, G; Brouwer, T; Bryant, B; Calaza, M; Calderone, A; Calza, S; Capuzzi, S; Carbonell-Caballero, J; Carlin, D; Carter, H; Castagnoli, L; Celebi, R; Cesareni, G; Chang, H; Chen, Gc; Chen, Hr; Chen, Hy; Cheng, Lj; Chernomoretz, A; Chicco, D; Cho, Kh; Cho, S; Choi, D; Choi, J; Choi, K; Choi, M; De Cock, M; Coker, E; Cortes-Ciriano, I; Cserzo, M; Cubuk, C; Curtis, C; Van Daele, D; Dang, Cc; Dijkstra, T; Dopazo, J; Draghici, S; Drosou, A; Dumontier, M; Ehrhart, F; Eid, Fe; Elhefnawi, M; Elmarakeby, H; Van Engelen, B; Engin, Hb; De Esch, I; Evelo, C; Falcao, Ao; Farag, S; Fernandez-Lozano, C; Fisch, K; Flobak, A; Fornari, C; Foroushani, Abk; Fotso, Dc; Fourches, D; Friend, S; Frigessi, A; Gao, F; Gao, Xt; Gerold, Jm; Gestraud, P; Ghosh, S; Gillberg, J; Godoy-Lorite, A; Godynyuk, L; Godzik, A; Goldenberg, A; Gomez-Cabrero, D; Gonen, M; De Graaf, C; Gray, H; Grechkin, M; Guimera, R; Guney, E; Haibe-Kains, B; Han, Y; Hase, T; He, D; He, Ly; Heath, Ls; Hellton, Kh; Helmer-Citterich, M; Hidalgo, Mr; Hidru, D; Hill, Sm; Hochreiter, S; Hong, S; Hovig, E; Hsueh, Yc; Hu, Zy; Huang, Jk; Huang, Rs; Hunyady, L; Hwang, J; Hwang, Th; Hwang, W; Hwang, Y; Isayev, O; Walk, Obd; Jack, J; Jahandideh, S; Ji, Jd; Jo, Y; Kamola, Pj; Kanev, Gk; Karacosta, L; Karimi, M; Kaski, S; Kazanov, M; Khamis, Am; Khan, Sa; Kiani, Na; Kim, A; Kim, J; Kim, J; Kim, K; Kim, K; Kim, S; Kim, Y; Kim, Y; Kirk, Pdw; Kitano, H; Klambauer, G; Knowles, D; Ko, M; Kohn-Luque, A; Kooistra, Aj; Kuenemann, Ma; Kuiper, M; Kurz, C; Kwon, M; Van Laarhoven, T; Laegreid, A; Lederer, S; Lee, H; Lee, J; Lee, Yw; Leppaho, E; Lewis, R; Li, J; Li, L; Liley, J; Lim, Wk; Lin, C; Liu, Yy; Lopez, Y; Low, J; Lysenko, A; Machado, D; Madhukar, N; De Maeyer, D; Malpartida, Ab; Mamitsuka, H; Marabita, F; Marchal, K; Marttinen, P; Mason, D; Mazaheri, A; Mehmood, A; Mehreen, A; Michaut, M; Miller, Ra; Mitsopoulos, C; Modos, D; Van Moerbeke, M; Moo, K; Motsinger-Reif, A; Movva, R; Muraru, S; Muratov, E; Mushthofa, M; Nagarajan, N; Nakken, S; Nath, A; Neuvial, P; Newton, R; Ning, Z; De Niz, C; Oliva, B; Olsen, C; Palmeri, A; Panesar, B; Papadopoulos, S; Park, J; Park, S; Park, S; Pawitan, Y; Peluso, D; Pendyala, S; Peng, J; Perfetto, L; Pirro, S; Plevritis, S; Politi, R; Poon, H; Porta, E; Prellner, I; Preuer, K; Pujana, Ma; Ramnarine, R; Reid, Je; Reyal, F; Richardson, S; Ricketts, C; Rieswijk, L; Rocha, M; Rodriguez-Gonzalvez, C; Roell, K; Rotroff, D; De Ruiter, Jr; Rukawa, P; Sadacca, B; Safikhani, Z; Safitri, F; Sales-Pardo, M; Sauer, S; Schlichting, M; Seoane, Ja; Serra, J; Shang, Mm; Sharma, A; Sharma, H; Shen, Y; Shiga, M; Shin, M; Shkedy, Z; Shopsowitz, K; Sinai, S; Skola, D; Smirnov, P; Soerensen, If; Soerensen, P; Song, Jh; Song, So; Soufan, O; Spitzmueller, A; Steipe, B; Suphavilai, C; Tamayo, Sp; Tamborero, D; Tang, J; Tanoli, Zur; Tarres-Deulofeu, M; Tegner, J; Thommesen, L; Tonekaboni, Sam; Tran, H; De Troyer, E; Truong, A; Tsunoda, T; Turu, G; Tzeng, Gy; Verbeke, L; Videla, S; Vis, D; Voronkov, A; Votis, K; Wang, A; Wang, Hqh; Wang, Pw; Wang, S; Wang, W; Wang, Xc; Wang, X; Wennerberg, K; Wernisch, L; Wessels, L; Van Westen, Gjp; Westerman, Ba; White, Sr; Willighagen, E; Wurdinger, T; Xie, L; Xie, Sl; Xu, H; Yadav, B; Yau, C; Yeerna, H; Yin, Jw; Yu, M; Yu, M; Yun, Sj; Zakharov, A; Zamichos, A; Zanin, - 01a Articolo in rivista
rivista: NATURE COMMUNICATIONS (London: Nature Publishing Group-Springer Nature) pp. - - issn: 2041-1723 - wos: WOS:000471758500010 (174) - scopus: 2-s2.0-85067453487 (192)
11573/1660184 - 2019 -
Myo-REG: a portal for signaling interactions in muscle regeneration Palma, A; Perpetuini, Ac; Ferrentino, F; Fuoco, C; Gargioli, C; Giuliani, G; Iannuccelli, M; Licata, L; Micarelli, E; Paoluzi, S; Perfetto, L; Petrilli, Ll; Reggio, A; Rosina, M; Sacco, F; Vumbaca, S; Zuccotti, A; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: FRONTIERS IN PHYSIOLOGY (Lausanne: Frontiers Research Foundation, 2010-) pp. - - issn: 1664-042X - wos: WOS:000488077300001 (7) - scopus: 2-s2.0-85073006415 (6)
11573/1660718 - 2019 -
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination Perfetto, L; Acencio, M L; Bradley, G; Cesareni, G; Del Toro, N; Fazekas, D; Hermjakob, H; Korcsmaros, T; Kuiper, M; Lægreid, A; Lo Surdo, P; Lovering, R C; Orchard, S; Porras, P; Thomas, P D; Touré, V; Zobolas, J; Licata, L - 01a Articolo in rivista
rivista: BIOINFORMATICS ([Oxford] : Oxford University Press) pp. 3779-3785 - issn: 1367-4811 - wos: WOS:000499322300029 (19) - scopus: 2-s2.0-85072698050 (22)
11573/1660157 - 2019 -
Integration of macromolecular complex data into the Saccharomyces Genome Database Wong, Ed; Skrzypek, Ms; Weng, S; Binkley, G; Meldal, Bhm; Perfetto, L; Orchard, Se; Engel, Sr; Cherry, Jm - 01a Articolo in rivista
rivista: DATABASE (Oxford: Oxford Journals, 2009-
Oxford,UK: Oxford University Press) pp. 1-5 - issn: 1758-0463 - wos: WOS:000469873700001 (6) - scopus: 2-s2.0-85061055622 (6)
Lo Surdo, P; Calderone, A; Iannuccelli, M; Licata, L; Peluso, D; Castagnoli, L; Cesareni, G; Perfetto, L - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 527-534 - issn: 1362-4962 - wos: WOS:000419550700081 (27) - scopus: 2-s2.0-85040932140 (31)
11573/1660161 - 2018 -
Combining phosphoproteomics datasets and literature information to reveal the functional connections in a cell phosphorylation network Sacco, F; Perfetto, L; Cesareni, G - 01g Articolo di rassegna (Review)
rivista: PROTEOMICS (Weinheim : Wiley-VCH-Verl.) pp. - - issn: 1615-9861 - wos: WOS:000428343700003 (15) - scopus: 2-s2.0-85044424675 (17)
11573/1660169 - 2017 -
SIGNOR: A Database of Causal Relationships Between Biological Entities-A Short Guide to Searching and Browsing Lo Surdo, P; Calderone, A; Cesareni, G; Perfetto, L - 01a Articolo in rivista
rivista: CURRENT PROTOCOLS IN BIOINFORMATICS (New York : Wiley, c2003-) pp. - - issn: 1934-3396 - wos: (0) - scopus: 2-s2.0-85029438175 (8)
11573/1660172 - 2016 -
SIGNOR: a database of causal relationships between biological entities Perfetto, L; Briganti, L; Calderone, A; Perpetuini, Ac; Iannuccelli, M; Langone, F; Licata, L; Marinkovic, M; Mattioni, A; Pavlidou, T; Peluso, D; Petrilli, Ll; Pirrò, S; Posca, D; Santonico, E; Silvestri, A; Spada, F; Castagnoli, L; Cesareni, G. - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 548-554 - issn: 1362-4962 - wos: WOS:000371261700076 (162) - scopus: 2-s2.0-84976871607 (173)
11573/1660166 - 2014 -
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases Orchard, S; Ammari, M; Aranda, B; Breuza, L; Briganti, L; Broackes-Carter, F; Campbell, Nh; Chavali, G; Chen, C; Del-Toro, N; Duesbury, M; Dumousseau, M; Galeota, E; Hinz, U; Iannuccelli, M; Jagannathan, S; Jimenez, R; Khadake, J; Lagreid, A; Licata, L; Lovering, Rc; Meldal, B; Melidoni, An; Milagros, M; Peluso, D; Perfetto, L; Porras, P; Raghunath, A; Ricard-Blum, S; Roechert, B; Stutz, A; Tognolli, M; Van Roey, K; Cesareni, G; Hermjakob, H - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. - - issn: 1362-4962 - wos: WOS:000331139800054 (1227) - scopus: 2-s2.0-84891799734 (1299)
Liberti, S; Sacco, F; Calderone, A; Perfetto, L; Iannuccelli, M; Panni, S; Santonico, E; Palma, A; Nardozza, Ap; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: THE FEBS JOURNAL (Blackwell Pub., Oxford, UK) pp. - - issn: 1742-4658 - wos: WOS:000313906000004 (48) - scopus: 2-s2.0-84872816249 (50)
11573/1660186 - 2013 -
Exploring the diversity of SPRY/B30.2-mediated interactions Perfetto, L; Gherardini, Pf; Davey, Ne; Diella, F; Helmer-Citterich, M; Cesareni, G - 01a Articolo in rivista
rivista: TRENDS IN BIOCHEMICAL SCIENCES (Elsevier Trends Journals:An Imprint of Elsevier Science Limited, The Boulevard, Langford Lane, Kidlington, Oxford 0X5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, Fax: 011 44 1865 843010) pp. - - issn: 0968-0004 - wos: WOS:000314143700006 (71) - scopus: 2-s2.0-84871474752 (56)
11573/1660165 - 2012 -
The protein interaction network mediated by human SH3 domains Carducci, M; Perfetto, L; Briganti, L; Paoluzi, S; Costa, S; Zerweck, J; Schutkowski, M; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: BIOTECHNOLOGY ADVANCES (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. - - issn: 0734-9750 - wos: WOS:000300479200002 (41) - scopus: 2-s2.0-84855756033 (42)
11573/1660176 - 2012 -
MINT, the molecular interaction database: 2012 update Licata, L; Briganti, L; Peluso, D; Perfetto, L; Iannuccelli, M; Galeota, E; Sacco, F; Palma, A; Nardozza, Ap; Santonico, E; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. - - issn: 1362-4962 - wos: WOS:000298601300128 (720) - scopus: 2-s2.0-84860918589 (797)
11573/1660154 - 2012 -
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium Orchard, S; Kerrien, S; Abbani, S; Aranda, B; Bhate, J; Bidwell, S; Bridge, A; Briganti, L; Brinkman, Fs; Cesareni, G; Chatr-Aryamontri, A; Chautard, E; Chen, C; Dumousseau, M; Goll, J; Hancock, Re; Hannick, Li; Jurisica, I; Khadake, J; Lynn, Dj; Mahadevan, U; Perfetto, L; Raghunath, A; Ricard-Blum, S; Roechert, B; Salwinski, L; Stümpflen, V; Tyers, M; Uetz, P; Xenarios, I; Hermjakob, H - 01a Articolo in rivista
rivista: NATURE METHODS (New York, NY : Nature Pub. Group, c2004-) pp. - - issn: 1548-7091 - wos: WOS:000302218500015 (370) - scopus: 2-s2.0-84859208501 (409)
11573/1660174 - 2012 -
The human phosphatase interactome: An intricate family portrait Sacco, F; Perfetto, L; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: FEBS LETTERS (Elsevier BV:PO Box 211, 1000 AE Amsterdam Netherlands:011 31 20 4853757, 011 31 20 4853642, 011 31 20 4853641, EMAIL: nlinfo-f@elsevier.nl, INTERNET: http://www.elsevier.nl, Fax: 011 31 20 4853598) pp. - - issn: 0014-5793 - wos: WOS:000307295200021 (157) - scopus: 2-s2.0-84864583212 (168)
11573/1660158 - 2011 -
BioCreative III interactive task: an overview Arighi, Cn; Roberts, Pm; Agarwal, S; Bhattacharya, S; Cesareni, G; Chatr-Aryamontri, A; Clematide, S; Gaudet, P; Giglio, Mg; Harrow, I; Huala, E; Krallinger, M; Leser, U; Li, D; Liu, F; Lu, Z; Maltais, Lj; Okazaki, N; Perfetto, L; Rinaldi, F; Sætre, R; Salgado, D; Srinivasan, P; Thomas, Pe; Toldo, L; Hirschman, L; Wu, Ch - 01a Articolo in rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303932700004 (39) - scopus: 2-s2.0-80053393894 (69)
11573/1660180 - 2011 -
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases Chatr-Aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M - 01a Articolo in rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303932700008 (12) - scopus: 2-s2.0-80053430329 (12)
11573/1660156 - 2011 -
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text Krallinger, M; Vazquez, M; Leitner, F; Salgado, D; Chatr-Aryamontri, A; Winter, A; Perfetto, L; Briganti, L; Licata, L; Iannuccelli, M; Castagnoli, L; Cesareni, G; Tyers, M; Schneider, G; Rinaldi, F; Leaman, R; Gonzalez, G; Matos, S; Kim, S; Wilbur, Wj; Rocha, L; Shatkay, H; Tendulkar, Av; Agarwal, S; Liu, F; Wang, X; Rak, R; Noto, K; Elkan, C; Lu, Z; Dogan, Ri; Fontaine, Jf; Andrade-Navarro, Ma; Valencia, A - 01a Articolo in rivista
rivista: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. - - issn: 1471-2105 - wos: WOS:000303932700003 (88) - scopus: 2-s2.0-80053423937 (116)
11573/1660167 - 2009 -
MINT, the molecular interaction database: 2009 update Ceol, A; Chatr Aryamontri, A; Licata, L; Peluso, D; Briganti, L; Perfetto, L; Castagnoli, L; Cesareni, G - 01a Articolo in rivista
rivista: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. - - issn: 1362-4962 - wos: WOS:000276399100086 (388) - scopus: 2-s2.0-75549083295 (434)