DANIELE CAPOCEFALO

PhD Graduate

PhD program:: XXXI


supervisor: Dr. Tommaso Mazza
advisor: Prof. Marco Tripodi

Thesis title: Reverse Engineering of Natural Systems by Graph Theory


Research products

11573/1697213 - 2023 - Curation of causal interactions mediated by genes associated with autism accelerates the understanding of gene-phenotype relationships underlying neurodevelopmental disorders
Iannuccelli, Marta; Vitriolo, Alessandro; Licata, Luana; Lo Surdo, Prisca; Contino, Silvia; Cheroni, Cristina; Capocefalo, Daniele; Castagnoli, Luisa; Testa, Giuseppe; Cesareni, Gianni; Perfetto, Livia - 01a Articolo in rivista
paper: MOLECULAR PSYCHIATRY (Basingstoke: Nature Publishing Group.) pp. - - issn: 1476-5578 - wos: WOS:001129526200005 (0) - scopus: 2-s2.0-85179653018 (0)

11573/1488393 - 2020 - Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis
Parca, L.; Truglio, M.; Biagini, T.; Castellana, S.; Petrizzelli, F.; Capocefalo, D.; Jordan, F.; Carella, M.; Mazza, T. - 01a Articolo in rivista
paper: GIGASCIENCE (London : BioMed Central) pp. - - issn: 2047-217X - wos: WOS:000606074100013 (9) - scopus: 2-s2.0-85094220525 (9)

11573/1284129 - 2019 - Are gaming-enabled graphic processing unit cards convenient for molecular dynamics simulation?
Biagini, Tommaso; Petrizzelli, Francesco; Truglio, Mauro; Cespa, Roberto; Barbieri, Alessandro; Capocefalo, Daniele; Castellana, Stefano; Tevy, Maria Florencia; Carella, Massimo; Mazza, Tommaso - 01b Commento, Erratum, Replica e simili
paper: EVOLUTIONARY BIOINFORMATICS ONLINE (Auckland, N.Z. : Libertas Academica, 2005-) pp. - - issn: 1176-9343 - wos: WOS:000469925000001 (12) - scopus: 2-s2.0-85071287927 (13)

11573/1184929 - 2018 - Food web topology and nested keystone species complexes
Capocefalo, Daniele; Pereira, Juliana; Mazza, Tommaso; Jordán, Ferenc - 01a Articolo in rivista
paper: COMPLEXITY ([New York, N.Y.] : John Wiley & Sons, Inc.) pp. - - issn: 1099-0526 - wos: WOS:000454088500001 (6) - scopus: 2-s2.0-85060345503 (8)

11573/1184833 - 2018 - Systematic analysis of mouse genome reveals distinct evolutionary and functional properties among circadian and ultradian genes
Castellana, Stefano; Mazza, Tommaso; Capocefalo, Daniele; Genov, Nikolai; Biagini, Tommaso; Fusilli, Caterina; Scholkmann, Felix; Relógio, Angela; Hogenesch, John B.; Mazzoccoli, Gianluigi - 01a Articolo in rivista
paper: FRONTIERS IN PHYSIOLOGY (Lausanne: Frontiers Research Foundation, 2010-) pp. 1178- - issn: 1664-042X - wos: WOS:000442534500001 (16) - scopus: 2-s2.0-85052054046 (16)

11573/1021276 - 2018 - Insights from Molecular Characterization of Adult Patients of Families with Multigenerational Diabetes Mellitus
Pezzilli, Serena; Ludovico, Ornella; Biagini, Tommaso; Mercuri, Luana; Alberico, Federica; Lauricella, Eleonora; Dallali, Hamza; Capocefalo, Daniele; Carella, Massimo; Miccinilli, Elide; Piscitelli, Pamela; Scarale, Maria Giovanna; Mazza, Tommaso; Trischitta, Vincenzo; Prudente, Sabrina - 01a Articolo in rivista
paper: DIABETES (American Diabetes Association:National Service Center, 1701 North Beaureguard Street:Alexandria, VA 22311:(800)232-3472, (703)549-1500, INTERNET: http://www.diabetes.org/diabetscare, Fax: (703)549-6995) pp. 137-145 - issn: 0012-1797 - wos: WOS:000418439900015 (15) - scopus: 2-s2.0-85038919741 (18)

11573/1021275 - 2017 - Molecular dynamics recipes for genome research
Biagini, Tommaso; Chillemi, Giovanni; Mazzoccoli, Gianluigi; Grottesi, Alessandro; Fusilli, Caterina; Capocefalo, Daniele; Castellana, Stefano; Vescovi, Angelo Luigi; Mazza, Tommaso - 01a Articolo in rivista
paper: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals -London : Henry Stewart, 2000-) pp. - - issn: 1467-5463 - wos: WOS:000453743200012 (18) - scopus: 2-s2.0-85056530983 (22)

11573/1021274 - 2017 - High-confidence assessment of functional impact of human mitochondrial non-synonymous genome variations by APOGEE
Castellana, Stefano; Fusilli, Caterina; Mazzoccoli, Gianluigi; Biagini, Tommaso; Capocefalo, Daniele; Carella, Massimo; Vescovi, Angelo Luigi; Mazza, Tommaso - 01a Articolo in rivista
paper: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. e1005628- - issn: 1553-734X - wos: WOS:000404565400056 (45) - scopus: 2-s2.0-85021737153 (50)

11573/1021266 - 2017 - MicroRNA co-expression networks exhibit increased complexity in pancreatic ductal compared to Vater’s papilla adenocarcinoma
Mazza, Tommaso; Copetti, Massimiliano; Capocefalo, Daniele; Fusilli, Caterina; Biagini, Tommaso; Carella, Massimo; De Bonis, Antonio; Mastrodonato, Nicola; Piepoli, Ada; Pazienza, Valerio; Maiello, Evaristo; Francesco Di Mola, Fabio; Di Sebastiano, Pierluigi; Andriulli, Angelo; Tavano, Francesca - 01a Articolo in rivista
paper: ONCOTARGET (Albany, N.Y. : Impact Journals) pp. - - issn: 1949-2553 - wos: WOS:000419563600049 (6) - scopus: 2-s2.0-85036579517 (7)

11573/1021277 - 2016 - Multifaceted enrichment analysis of RNA-RNA crosstalk reveals cooperating micro-societies in human colorectal cancer
Mazza, Tommaso; Mazzoccoli, Gianluigi; Fusilli, Caterina; Capocefalo, Daniele; Panza, Anna; Biagini, Tommaso; Castellana, Stefano; Gentile, Annamaria; De Cata, Angelo; Palumbo, Orazio; Stallone, Raffaella; Rubino, Rosa; Carella, Massimo; Piepoli, Ada - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485 Editore precedente: Information Retrieval ltd., London) pp. 4025-4036 - issn: 0305-1048 - wos: WOS:000377472100016 (12) - scopus: 2-s2.0-84970004097 (14)

11573/1021273 - 2016 - Analysis of clock gene-miRNA correlation networks reveals candidate drivers in colorectal cancer
Mazzoccoli, Gianluigi; Colangelo, Tommaso; Panza, Anna; Rubino, Rosa Anna; Tiberio, Cristiana; Palumbo, Orazio; Carella, Massimo; Trombetta, Domenico; Gentile, Annamaria; Tavano, Francesca; Valvano, Maria Rosa; Storlazzi, Clelia Tiziana; Macchia, Gemma; De Cata, Angelo; Bisceglia, Giovanni; Capocefalo, Daniele; Colantuoni, Vittorio; Sabatino, Lina; Piepoli, Ada; Mazza, Tommaso - 01a Articolo in rivista
paper: ONCOTARGET (Albany, N.Y. : Impact Journals) pp. 45444-45461 - issn: 1949-2553 - wos: WOS:000385402300046 (21) - scopus: 2-s2.0-84979901301 (25)

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