11573/1705611 - 2024 -
Peer Observation and mentoring in the QuID Teacher Development Programme at Sapienza University of Rome. Corsi, Elisabetta; Bortolotti, Ilaria; Cesareni, Donatella; Consorti, Fabrizio; Via, Allegra - 02a Capitolo o Articolo
book: Mentoring in Higher Education - ()
11573/1705608 - 2024 -
Strategie di supporto e accompagnamento allo sviluppo professionale della docenza: il Programma QuID di Sapienza Università di Roma. Corsi, Elisabetta; Bortolotti, Ilaria; Cesareni, Donatella; Via, Allegra - 02a Capitolo o Articolo
book: Promuovere e valorizzare le competenze didattiche in università attraverso il servizio di TLC. Il progetto, le azioni, le professionalità - ()
11573/1723826 - 2024 -
Effect of Cholesterol-Lowering Variants in ANGPTL3 and APOB Genes on Liver Disease Di Costanzo, Alessia; Pirona, Ilaria; Buonaiuto, Silvia; D'erasmo, Laura; Bini, Simone; Tramontano, Daniele; Covino, Stella; Maiorca, Carlo; Minicocci, Ilenia; Sponziello, Marialuisa; Baratta, Francesco; Commodari, Daniela; Colonna, Vincenza; Via, Allegra; Arca, Marcello - 01a Articolo in rivista
paper: JOURNAL OF THE AMERICAN COLLEGE OF CARDIOLOGY ([New York, N.Y.] : Elsevier Science) pp. 1767-1770 - issn: 1558-3597 - wos: (0) - scopus: 2-s2.0-85206249830 (0)
11573/1720001 - 2024 -
SARS-CoV-2 BA.2.86 Spike: insights into its structure, function, and implications Quaranta, Miriana; Scarpa, Fabio; Via, Allegra; Ciccozzi, Massimo; Pascarella, Stefano - 04f Poster
conference: 48th FEBS congress (Milano, Italia)
book: Integrative structural biology approaches - ()
11573/1720004 - 2024 -
SARS-CoV-2 JN.1 Spike: insights into its structure, function, and implications Quaranta, Miriana; Via, Allegra; Pascarella, Stefano - 04f Poster
conference: ECCB 2024 (Turku, Finlandia)
book: Proteins - ()
11573/1679508 - 2023 -
Resources and tools for rare disease variant interpretation Licata, Luana; Via, Allegra; Turina, Paola; Babbi, Giulia; Benevenuta, Silvia; Carta, Claudio; Casadio, Rita; Cicconardi, Andrea; Facchiano, Angelo; Fariselli, Piero; Giordano, Deborah; Isidori, Federica; Marabotti, Anna; Martelli, Pier Luigi; Pascarella, Stefano; Pinelli, Michele; Pippucci, Tommaso; Russo, Roberta; Savojardo, Castrense; Scafuri, Bernardina; Valeriani, Lucrezia; Capriotti, Emidio - 01a Articolo in rivista
paper: FRONTIERS IN MOLECULAR BIOSCIENCES (Lausanne : Frontiers Media S.A., 2014-) pp. - - issn: 2296-889X - wos: WOS:001000438900001 (5) - scopus: 2-s2.0-85160058924 (4)
11573/1676908 - 2023 -
Molecular in-depth on the epidemiological expansion of SARS-CoV-2 XBB.1.5 Scarpa, Fabio; Azzena, Ilenia; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Ciccozzi, Alessandra; Angeletti, Silvia; Imperia, Elena; Giovanetti, Marta; Maruotti, Antonello; Borsetti, Alessandra; Cauda, Roberto; Cassone, Antonio; Via, Allegra; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01a Articolo in rivista
paper: MICROORGANISMS (Basel: MDPI) pp. 912- - issn: 2076-2607 - wos: WOS:000977957200001 (11) - scopus: 2-s2.0-85156271815 (11)
11573/1673653 - 2023 -
Genetic and structural genome-based survey reveals the low potential for epidemiological expansion of the SARS-CoV-2 XBB.1.5 sublineage Scarpa, Fabio; Imperia, Elena; Azzena, Ilenia; Giovanetti, Marta; Benvenuto, Domenico; Locci, Chiara; Casu, Marco; Fiori, Pier Luigi; Maruotti, Antonello; Ceccarelli, Giancarlo; Borsetti, Alessandra; Caruso, Arnaldo; Cauda, Roberto; Cassone, Antonio; Via, Allegra; Pascarella, Stefano; Sanna, Daria; Ciccozzi, Massimo - 01f Lettera, Nota
paper: JOURNAL OF INFECTION (Harcourt Publishers Limited:Foots Cray High Street, Sidcup Kent DA14 5HP United Kingdom:011 44 20 83085700, EMAIL: journals@harcourt.com, INTERNET: http://www.harcourt-international.com, Fax: 011 44 20 83085876) pp. - - issn: 0163-4453 - wos: WOS:001000883300001 (7) - scopus: 2-s2.0-85152910788 (8)
11573/1663623 - 2022 -
Introducing the The Mastery Rubric for Bioinformatics – a Professional Guide Via, Allegra; Palagi, Patricia M.; Lindvall, Jessica M.; Attwood, Teresa K.; Goblet Foundation, The - 01a Articolo in rivista
paper: F1000RESEARCH (London : F1000Research) pp. - - issn: 2046-1402 - wos: (0) - scopus: (0)
11573/1663625 - 2022 -
Using the The Mastery Rubric for Bioinformatics – A professional guide Via, Allegra; Palagi, Patricia M.; Lindvall, Jessica M.; Attwood, Teresa K.; Goblet Foundation, The - 01a Articolo in rivista
paper: F1000RESEARCH (London : F1000Research) pp. 1-18 - issn: 2046-1402 - wos: (0) - scopus: (0)
Caudai, Claudia; Galizia, Antonella; Geraci, Filippo; Le Pera, Loredana; Morea, Veronica; Salerno, Emanuele; Via, Allegra; Colombo, Teresa - 01g Articolo di rassegna (Review)
paper: COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL (Göteborg : Chalmers University of Technology, 2011-) pp. 5762-5790 - issn: 2001-0370 - wos: WOS:000712866600003 (34) - scopus: 2-s2.0-85117909367 (43)
11573/1663530 - 2020 -
Ten simple rules for making training materials FAIR Garcia, Leyla; Batut, Bérénice; Burke, Melissa L; Kuzak, Mateusz; Psomopoulos, Fotis; Arcila, Ricardo; Attwood, Teresa K; Beard, Niall; Carvalho-Silva, Denise; Dimopoulos, Alexandros C; Del Angel, Victoria Dominguez; Dumontier, Michel; Gurwitz, Kim T; Krause, Roland; Mcquilton, Peter; Le Pera, Loredana; Morgan, Sarah L; Rauste, Päivi; Via, Allegra; Kahlem, Pascal; Rustici, Gabriella; Van Gelder, Celia W G; Palagi, Patricia M - 01g Articolo di rassegna (Review)
paper: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. - - issn: 1553-734X - wos: WOS:000538053200031 (18) - scopus: 2-s2.0-85085156809 (22)
11573/1663518 - 2020 -
A framework to assess the quality and impact of bioinformatics training across ELIXIR Gurwitz, Kim T; Singh Gaur, Prakash; Bellis, Louisa J; Larcombe, Lee; Alloza, Eva; Balint, Balint Laszlo; Botzki, Alexander; Dimec, Jure; Dominguez Del Angel, Victoria; Fernandes, Pedro L; Korpelainen, Eija; Krause, Roland; Kuzak, Mateusz; Le Pera, Loredana; Leskošek, Brane; Lindvall, Jessica M; Marek, Diana; Martinez, Paula A; Muyldermans, Tuur; Nygård, Ståle; Palagi, Patricia M; Peterson, Hedi; Psomopoulos, Fotis; Spiwok, Vojtech; Van Gelder, Celia W G; Via, Allegra; Vidak, Marko; Wibberg, Daniel; Morgan, Sarah L; Rustici, Gabriella - 01a Articolo in rivista
paper: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. - - issn: 1553-734X - wos: WOS:000558078100023 (4) - scopus: 2-s2.0-85088498402 (5)
11573/1663621 - 2020 -
Course design: considerations for trainers – a professional guide Via, Allegra; Palagi, Patricia M.; Lindvall, Jessica M.; Tractenberg, Rochelle E.; Attwood, Teresa K.; Goblet Foundation, The - 01a Articolo in rivista
paper: F1000RESEARCH (London : F1000Research) pp. - - issn: 2046-1402 - wos: (0) - scopus: (0)
11573/1663533 - 2019 -
The Mastery Rubric for Bioinformatics: A tool to support design and evaluation of career-spanning education and training Tractenberg, Rochelle E; Lindvall, Jessica M; Attwood, Teresa K; Via, Allegra - 01a Articolo in rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. - - issn: 1932-6203 - wos: WOS:000533892300013 (6) - scopus: 2-s2.0-85075622495 (11)
11573/1663537 - 2019 -
A new pan-European Train-the-Trainer programme for bioinformatics: pilot results on feasibility, utility and sustainability of learning Via, Allegra; Attwood, Teresa K; Fernandes, Pedro L; Morgan, Sarah L; Schneider, Maria Victoria; Palagi, Patricia M; Rustici, Gabriella; Tractenberg, Rochelle E - 01a Articolo in rivista
paper: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals
-London : Henry Stewart, 2000-) pp. 405-415 - issn: 1467-5463 - wos: WOS:000462706200006 (11) - scopus: 2-s2.0-85063713581 (11)
11573/1663542 - 2018 -
Lesson development for Open Source Software best practices adoption Kuzak, M; Harrow, J; Jimenez, Rc; Martinez, Pa; Psomopoulos, Fe; Varekova, Rs; Via, A - 04b Atto di convegno in volume
conference: IEEE 14th International Conference on eScience, e-Science 2018 (Amsterdam)
book: e-Science 2018 - (978-1-5386-9156-4)
11573/1181143 - 2018 -
Analysis of point mutations leading to antibiotic resistance in Streptococcus pneumoniae Staid, David Sasah; Gerda, Užubalytė; Via, Allegra - 04f Poster
conference: 15th BITS Annual meeting (Torino)
book: Abstract book BITS 2018 - ()
11573/1663544 - 2017 -
The FAIRification of data and the potential of FAIR resources demonstrated in practice at the Rome Bring Your Own Data workshop Carta, C.; Roos, M.; Jacobsen, A.; Kaliyaperumal, R.; Thompson, M.; Wilkinson, M. D.; Cornet, R.; Waagmeester, A.; Van Enckevort, D.; Jansen, M.; Licata, L.; Via, A.; Taruscio, D. - 04d Abstract in atti di convegno
conference: 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, SWAT4LS 2017 (Italian National Research Council (CNR), ita)
book: CEUR Workshop Proceedings - ()
11573/1663549 - 2017 -
Four simple recommendations to encourage best practices in research software Jiménez, Rafael C; Kuzak, Mateusz; Alhamdoosh, Monther; Barker, Michelle; Batut, Bérénice; Borg, Mikael; Capella-Gutierrez, Salvador; Chue Hong, Neil; Cook, Martin; Corpas, Manuel; Flannery, Madison; Garcia, Leyla; Gelpí, Josep Ll; Gladman, Simon; Goble, Carole; González Ferreiro, Montserrat; Gonzalez-Beltran, Alejandra; Griffin, Philippa C; Grüning, Björn; Hagberg, Jonas; Holub, Petr; Hooft, Rob; Ison, Jon; Katz, Daniel S; Leskošek, Brane; López Gómez, Federico; Oliveira, Luis J; Mellor, David; Mosbergen, Rowland; Mulder, Nicola; Perez-Riverol, Yasset; Pergl, Robert; Pichler, Horst; Pope, Bernard; Sanz, Ferran; Schneider, Maria V; Stodden, Victoria; Suchecki, Radosław; Svobodová Vařeková, Radka; Talvik, Harry-Anton; Todorov, Ilian; Treloar, Andrew; Tyagi, Sonika; Van Gompel, Maarten; Vaughan, Daniel; Via, Allegra; Wang, Xiaochuan; Watson-Haigh, Nathan S; Crouch, Steve - 01a Articolo in rivista
paper: F1000RESEARCH (London : F1000Research) pp. - - issn: 2046-1402 - wos: (0) - scopus: 2-s2.0-85024481292 (78)
11573/1663546 - 2017 -
The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training Morgan, Sarah L; Palagi, Patricia M; Fernandes, Pedro L; Koperlainen, Eija; Dimec, Jure; Marek, Diana; Larcombe, Lee; Rustici, Gabriella; Attwood, Teresa K; Via, Allegra - 01a Articolo in rivista
paper: F1000RESEARCH (London : F1000Research) pp. - - issn: 2046-1402 - wos: (0) - scopus: 2-s2.0-85029562148 (7)
11573/836258 - 2016 -
Tools and data services registry: a community effort to document bioinformatics resources Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil; Chmura, Piotr; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Della Vedova, Gianluca; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Gruüing, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedia; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Varěková, Radka Svobodová; Tosatto, Silvio; De La Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 38-47 - issn: 0305-1048 - wos: WOS:000371261700005 (78) - scopus: 2-s2.0-84976872277 (109)
11573/1673980 - 2015 -
GOBLET: the Global Organisation for Bioinformatics Learning, Education and Training Attwood, T. K.; Bongcam-Rudloff, E.; Brazas, M. E.; Corpas, M.; Gaudet, P.; Lewitter, F.; Mulder, N.; Palagi, P. M.; Schneider, M. V.; Van Gelder, C. W. G.; Banag, C.; Blackford, S.; Blatter, M. C.; Brooksbank, C.; Budd, A.; Charleston, M.; Christoffels, A.; Conesa, A.; Crowe, M.; Davies, A.; De Crecy-Lagard, V.; De Las Rivas, J.; Doyle, M.; Mac, Callum; Edwards, R.; Facchiano, A.; Fernandes, P.; Gaeta, B.; Heger, A.; Herringa, J.; Hughes, D.; Jimenez, R. C.; Korpelainen, E.; Lewitter, F.; Maclean, D.; Martinez, S. A. R.; Mcgrath, A.; Michalopoulos, I.; Ouellette, B. F.; Pearson, W. R.; Qi, W.; Romano, P.; Rother, K.; Sansone, S-A.; Schönbach, C.; Tastan-Bishop, O.; Trelles, O.; Twells, R.; Via, A.; Vriend, G.; Warnow, T.; Watson, M.; Westervelt, N.; Gutenberg, J.; Zanzoni, A. - 01a Articolo in rivista
paper: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. e1004143- - issn: 1553-7358 - wos: WOS:000354517600020 (40) - scopus: 2-s2.0-84929492822 (48)
11573/836226 - 2015 -
The GOBLET training portal: A global repository of bioinformatics training materials, courses and trainers Corpas, Manuel; Jimenez, Rafael C.; Bongcam Rudloff, Erik; Budd, Aidan; Brazas, Michelle D.; Fernandes, Pedro L.; Gaeta, Bruno; Van Gelder, Celia; Korpelainen, Eija; Lewitter, Fran; Mcgrath, Annette; Maclean, Daniel; Palagi, Patricia M.; Rother, Kristian; Taylor, Jan; Via, Allegra; Watson, Mick; Schneider, Maria Victoria; Attwood, Teresa K. - 01a Articolo in rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 140-142 - issn: 1367-4803 - wos: WOS:000347417000027 (20) - scopus: 2-s2.0-84922377238 (28)
11573/1674413 - 2015 -
Characterization of the differences in the cyclopiazonic acid binding mode to mammalian and P. Falciparum Ca2+ pumps: a computational study Di Marino, Daniele; D'annessa, Ilda; Coletta, Andrea; Via, Allegra; Tramontano, Anna - 01a Articolo in rivista
paper: PROTEINS (John Wiley & Sons Incorporated:Customer Service, 111 River Street:Hoboken, NJ 07030:(800)225-5945, (201)748-6000, EMAIL: societyinfo@wiley.com, INTERNET: http://www.wiley.com, Fax: (212)748-6551) pp. 564-574 - issn: 0887-3585 - wos: WOS:000349389200014 (12) - scopus: 2-s2.0-84922572516 (13)
11573/1663550 - 2015 -
Digestive peptidase evolution in holometabolous insects led to a divergent group of enzymes in Lepidoptera Dias, Renata O; Via, Allegra; Brandão, Marcelo M; Tramontano, Anna; Silva-Filho, Marcio C - 01a Articolo in rivista
paper: INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY (Elsevier Science Limited:Oxford Fulfillment Center, PO Box 800, Kidlington Oxford OX5 1DX United Kingdom:011 44 1865 843000, 011 44 1865 843699, EMAIL: asianfo@elsevier.com, tcb@elsevier.co.UK, INTERNET: http://www.elsevier.com, http://www.elsevier.com/locate/shpsa/, Fax: 011 44 1865 843010) pp. 1-11 - issn: 0965-1748 - wos: WOS:000350711000001 (17) - scopus: 2-s2.0-84921532173 (19)
11573/836252 - 2015 -
Data integration in biological research: An overview Lapatas, Vasileios; Stefanidakis, Michalis; Jimenez, Rafael C.; Via, Allegra; Schneider, Maria Victoria - 01a Articolo in rivista
paper: JOURNAL OF BIOLOGICAL RESEARCH (GRECE Thessaloniki School of Biology
Aristotle University of Thessaloniki,) pp. 9- - issn: 1790-045X - wos: WOS:000360428600001 (57) - scopus: (0)
11573/836236 - 2015 -
How pathogens use linear motifs to perturb host cell networks Via, Allegra; Uyar, Bora; Brun, Christine; Zanzoni, Andreas - 01a Articolo in rivista
paper: TRENDS IN BIOCHEMICAL SCIENCES (Elsevier Trends Journals:An Imprint of Elsevier Science Limited, The Boulevard, Langford Lane, Kidlington, Oxford 0X5 1GB United Kingdom:011 44 1865 843000, 011 44 1865 843699, Fax: 011 44 1865 843010) pp. 36-48-48 - issn: 0968-0004 - wos: WOS:000347862900006 (65) - scopus: 2-s2.0-84963980075 (69)
11573/836251 - 2015 -
A prismatic view of protein phosphorylation in health and disease Via, Allegra; Zanzoni, Andreas - 01a Articolo in rivista
paper: FRONTIERS IN GENETICS (Lausanne : Frontiers Research Foundation, 2010-) pp. - - issn: 1664-8021 - wos: WOS:000352773800001 (2) - scopus: 2-s2.0-84940039095 (2)
11573/836215 - 2014 -
The crystal structure of Giardia duodenalis 14-3-3 in the apo form: When protein post-translational modifications make the difference Fiorillo, Annarita; Di Marino, Daniele; Bertuccini, Lucia; Via, Allegra; Pozio, Edoardo; Camerini, Serena; Ilari, Andrea; Lalle, Marco - 01a Articolo in rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e92902- - issn: 1932-6203 - wos: WOS:000333355300143 (10) - scopus: 2-s2.0-84899072734 (12)
11573/836270 - 2014 -
Managing Your Biological Data with Python Via, Allegra; Tramontano, Anna - 03a Saggio, Trattato Scientifico
book: Managing your Biological Data with Python - (978-1-4398-8093-7)
11573/759711 - 2013 -
iAnn: an event sharing platform for the life sciences Jimenez, Rc; Albar, Jp; Bhak, J; Blatter, Mc; Blicher, T; Brazas, Md; Brooksbank, C; Budd, A; De Las Rivas, J; Dreyer, J; Van Driel, Ma; Dunn, Mj; Fernandes, Pl; Van Gelder, Cw; Hermjakob, H; Ioannidis, V; Judge, Dp; Kahlem, P; Korpelainen, E; Kraus, Hj; Loveland, J; Mayer, C; Mcdowall, J; Moran, F; Mulder, N; Nyronen, T; Rother, K; Salazar, Ga; Schneider, R; Via, Allegra; Villaveces, Jm; Yu, P; Schneider, Mv; Attwood, Tk; Corpas, M. - 01a Articolo in rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 1919-1921 - issn: 1367-4803 - wos: WOS:000322337000020 (4) - scopus: 2-s2.0-84880558569 (5)
11573/541232 - 2013 -
TiPs: A database of therapeutic targets in pathogens and associated tools Lepore, Rosalba; Tramontano, Anna; Via, Allegra - 01a Articolo in rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 1821-1822 - issn: 1367-4803 - wos: WOS:000321747800021 (2) - scopus: 2-s2.0-84880205892 (1)
11573/759715 - 2013 -
Best practices in bioinformatics training for life scientists Via, Allegra; Blicher, T; Bongcam Rudloff, E; Brazas, Md; Brooksbank, C; Budd, A; De Las Rivas, J; Dreyer, J; Fernandes, Pl; Van Gelder, C; Jacob, J; Jimenez, Rc; Loveland, J; Moran, F; Mulder, N; Nyrönen, T; Rother, K; Schneider, Mv; Attwood, Tk - 01a Articolo in rivista
paper: BRIEFINGS IN BIOINFORMATICS (London : Henry Stewart
Oxford : Oxford Journals) pp. 228-237 - issn: 1477-4054 - wos: WOS:000327435800002 (37) - scopus: 2-s2.0-84896940346 (46)
11573/442706 - 2012 -
Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition Caroli, Antonia; Simeoni, Silvia; Lepore, Rosalba; Tramontano, Anna; Via, Allegra - 01a Articolo in rivista
paper: BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (San Diego [etc.]: Elsevier [etc.]) pp. 576-581 - issn: 0006-291X - wos: WOS:000299491600098 (32) - scopus: 2-s2.0-84855819421 (33)
11573/442708 - 2012 -
Artemether resistance in vitro is linked to mutations in PfATP6 in travellers returning with Plasmodium falciparum infections. D. R., Pillai; R., Lau; K., Khairnar; Lepore, Rosalba; Via, Allegra; H. M., Staines; S., Krishna - 01a Articolo in rivista
paper: MALARIA JOURNAL (BioMed Central. London) pp. - - issn: 1475-2875 - wos: WOS:000307846200001 (28) - scopus: 2-s2.0-84860223200 (32)
11573/442906 - 2012 -
ELM-the database of eukaryotic linear motifs H., Dinkel; S., Michael; R. J., Weatheritt; N. E., Davey; K., Van Roey; B., Altenberg; G., Toedt; B., Uyar; M., Seiler; A., Budd; L., Jodicke; M. A., Dammert; C., Schroeter; M., Hammer; T., Schmidt; P., Jehl; C., Mcguigan; M., Dymecka; C., Chica; K., Luck; Via, Allegra; A., Chatr Aryamontri; N., Haslam; G., Grebnev; R. J., Edwards; M. O., Steinmetz; H., Meiselbach; F., Diella; T. J., Gibson - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. D242-D251 - issn: 1362-4962 - wos: WOS:000298601300037 (250) - scopus: 2-s2.0-84859051901 (266)
11573/396042 - 2012 -
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers M. V., Schneider; P., Walter; M. C., Blatter; J., Watson; M. D., Brazas; K., Rother; A., Budd; Via, Allegra; C. W. G., Van Gelder; J., Jacob; P., Fernandes; T. H., Nyronen; J., De Las Rivas; T., Blicher; R. C., Jimenez; J., Loveland; J., Mcdowall; P., Jones; B. W., Vaughan; R., Lopez; T. K., Attwood; C., Brooksbank - 01a Articolo in rivista
paper: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals
-London : Henry Stewart, 2000-) pp. 383-389 - issn: 1467-5463 - wos: WOS:000304536200011 (17) - scopus: 2-s2.0-84861805710 (21)
11573/666211 - 2011 -
Phospho3D 2.0: An enhanced database of three-dimensional structures of phosphorylation sites A., Zanzoni; D., Carbajo; F., Diella; P. F., Gherardini; Tramontano, Anna; M., Helmer Citterich; Via, Allegra - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford : Oxford University Press) pp. 268-271 - issn: 1362-4962 - wos: WOS:000285831700045 (37) - scopus: 2-s2.0-78651323535 (39)
11573/395861 - 2011 -
Phospho.ELM: A database of phosphorylation sites-update 2011 H., Dinkel; C., Chica; Via, Allegra; C. M., Gould; L. J., Jensen; T. J., Gibson; F., Diella - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D261-D267 - issn: 0305-1048 - wos: WOS:000285831700044 (475) - scopus: 2-s2.0-78651320816 (500)
book: NUCLEIC ACIDS RESEARCH - ()
11573/396049 - 2011 -
Identification of the Schistosoma mansoni Molecular Target for the Antimalarial Drug Artemether Lepore, Rosalba; Simeoni, Silvia; Raimondo, Domenico; Caroli, Antonia; Tramontano, Anna; Via, Allegra - 01a Articolo in rivista
paper: JOURNAL OF CHEMICAL INFORMATION AND MODELING (AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, USA, DC, 20036) pp. 3005-3016 - issn: 1549-9596 - wos: WOS:000297275000023 (14) - scopus: 2-s2.0-82355160761 (15)
11573/392844 - 2011 -
Molecular evolution of a gene cluster of serine proteases expressed in the Anopheles gambiae female reproductive tract. Mancini, Emiliano; Tammaro, Federica; Francesco, Baldini; Via, Allegra; Raimondo, Domenico; George, Phillip; George, P.; Audisio, Paolo Aldo; Sharakhov, Igor V.; Tramontano, Anna; Flaminia, Catteruccia; Della Torre, Alessandra; Alessandra Della Torre, - 01a Articolo in rivista
paper: BMC EVOLUTIONARY BIOLOGY ([London]: BioMed Central.) pp. 1-18 - issn: 1471-2148 - wos: WOS:000289415100001 (16) - scopus: 2-s2.0-79952694548 (21)
11573/392839 - 2011 -
Exploiting Publicly Available Biological and Biochemical Information for the Discovery of Novel Short Linear Motifs Sayadi, Ahmed; Leonardo, Briganti; Tramontano, Anna; Via, Allegra - 01a Articolo in rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e22270- - issn: 1932-6203 - wos: WOS:000292931200042 (1) - scopus: 2-s2.0-79960587672 (2)
11573/395862 - 2011 -
From sequence to structural analysis in protein phosphorylation motifs Via, Allegra; F., Diella; T. J., Gibson; M., Helmer Citterich - 01a Articolo in rivista
paper: FRONTIERS IN BIOSCIENCE (Frontiers in Bioscience:PO Box 160:Albertson, NY 11507:(516)484-2831, (516)484-0813, EMAIL: fbsadmin@bioscience.org, INTERNET: http://www.bioscience.org, Fax: (516)484-2831) pp. 1261-1275 - issn: 1093-9946 - wos: WOS:000290093700004 (18) - scopus: 2-s2.0-78651272733 (18)
book: FRONTIERS IN BIOSCIENCE - ()
11573/396037 - 2011 -
Ten Simple Rules for Developing a Short Bioinformatics Training Course Via, Allegra; Javier De Las, Rivas; Teresa K., Attwood; David, Landsman; Michelle D., Brazas; Jack A. M., Leunissen; Tramontano, Anna; Maria Victoria, Schneider - 01a Articolo in rivista
paper: PLOS COMPUTATIONAL BIOLOGY (San Francisco, CA : Public Library of Science, [2005]-) pp. e1002245- - issn: 1553-734X - wos: WOS:000297262700063 (26) - scopus: 2-s2.0-80055095018 (28)
11573/396068 - 2011 -
Protein structural motifs: identification, annotation and use in function prediction Via, Allegra; Tramontano, Anna - 02a Capitolo o Articolo
book: Sequence and Genome Analysis: Methods and Application II - (9780980733051)
11573/395866 - 2010 -
ELM: The status of the 2010 eukaryotic linear motif resource C. M., Gould; F., Diella; Via, Allegra; P., Puntervoll; C., Gemund; S., Chabanis Davidson; S., Michael; A., Sayadi; J. C., Bryne; C., Chica; M., Seiler; N. E., Davey; N., Haslam; R. J., Weatheritt; A., Budd; T., Hughes; J., Pas; L., Rychlewski; G., Trave; R., Aasland; M., Helmer Citterich; R., Linding; T. J., Gibson - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D167-D180 - issn: 0305-1048 - wos: WOS:000276399100027 (199) - scopus: 2-s2.0-71749098088 (210)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395833 - 2010 -
On the mechanism of chloroquine resistance in Plasmodium falciparum Chinappi, Mauro; Via, Allegra; Marcatili, Paolo; Tramontano, Anna - 01a Articolo in rivista
paper: PLOS ONE (San Francisco, CA : Public Library of Science) pp. e14064- - issn: 1932-6203 - wos: WOS:000284400100013 (55) - scopus: 2-s2.0-78649518769 (66)
11573/395864 - 2010 -
Bioinformatics training: A review of challenges, actions and support requirements M. V., Schneider; J., Watson; T., Attwood; K., Rother; A., Budd; J., Mcdowall; Via, Allegra; P., Fernandes; T., Nyronen; T., Blicher; P., Jones; M. C., Blatter; J., De Las Rivas; D. P., Judge; W., Van Der Gool; C., Brooksbank - 01a Articolo in rivista
paper: BRIEFINGS IN BIOINFORMATICS (-Oxford : Oxford Journals
-London : Henry Stewart, 2000-) pp. 544-551 - issn: 1467-5463 - wos: WOS:000284430100003 (34) - scopus: 2-s2.0-78649363050 (46)
book: BRIEFINGS IN BIOINFORMATICS - ()
11573/408479 - 2010 -
Molecular evolution of a gene cluster of female serine proteases involved in post-mating mechanisms of the malaria mosquito Anopheles gambiae Tammaro, Federica; Mancini, Emiliano; Baldini, F.; Rogers, D.; Via, A.; Raimondo, Domenico; George, P.; Sharakhov, I.; Tramontano, A.; Catteruccia, F.; Della Torre, Alessandra - 04a Atto di comunicazione a congresso
conference: IV Congresso Nazionale della Società Italiana di Biologia Evoluzionistica (SIBE) (Milano, Italia)
11573/395867 - 2009 -
A structure filter for the Eukaryotic Linear Motif Resource Via, Allegra; Cathryn M., Gould; Christine, Gemund; Toby J., Gibson; Manuela Helmer, Citterich - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 351-368 - issn: 1471-2105 - wos: WOS:000271764300001 (34) - scopus: 2-s2.0-71749106147 (40)
book: BMC BIOINFORMATICS - ()
11573/364915 - 2008 -
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures Ausiello, G; Gherardini P., F; Marcatili, Paolo; Tramontano, Anna; Via, Allegra; Helmer Citterich, E. - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 1-6 - issn: 1471-2105 - wos: WOS:000259022900002 (27) - scopus: 2-s2.0-43349087464 (30)
11573/395869 - 2008 -
Phospho.ELM: a database of phosphorylation sites--update 2008 Diella, F; Gould, C; Chica, C; Via, Allegra; Gibson, T. - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D240-D244 - issn: 0305-1048 - wos: WOS:000252545400044 (202) - scopus: 2-s2.0-38549092088 (215)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395875 - 2007 -
Phospho3D: a database of three-dimensional structures of protein phosphorylation sites A., Zanzoni; Ausiello, Gabriele; Via, Allegra; P. F., Gherardini; M., Helmer Citterich - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. D229-D231 - issn: 0305-1048 - wos: WOS:000243494600047 (40) - scopus: 2-s2.0-33846097128 (41)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395873 - 2007 -
SH3-Hunter: discovery of SH3 domain interaction sites in proteins E., Ferraro; D., Peluso; Via, Allegra; G., Ausiello; M., Helmer Citterich - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W451-W454 - issn: 0305-1048 - wos: WOS:000255311500085 (29) - scopus: 2-s2.0-34547571029 (30)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395870 - 2007 -
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites Gabriele, Ausiello; Daniele, Peluso; Via, Allegra; Manuela Helmer, Citterich - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S24-S33 - issn: 1471-2105 - wos: WOS:000246602100024 (14) - scopus: 2-s2.0-34248185418 (17)
book: BMC BIOINFORMATICS - ()
11573/395872 - 2007 -
3dLOGO: a web server for the identification, analysis and use of conserved protein substructures Via, Allegra; D., Peluso; P. F., Gherardini; E., De Rinaldis; Colombo, Teresa; G., Ausiello; M., Helmer Citterich - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W416-W419 - issn: 0305-1048 - wos: WOS:000255311500078 (4) - scopus: 2-s2.0-34547561586 (6)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395871 - 2007 -
False occurrences of functional motifs in protein sequences highlight evolutionary constraints Via, Allegra; F., Gherardini; Enrico, Ferraro; Gabriele, Ausiello; Gianpaolo Scalia, Tomba; Manuela Helmer, Citterich - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 68-81 - issn: 1471-2105 - wos: WOS:000244856400001 (7) - scopus: 2-s2.0-33947389235 (9)
book: BMC BIOINFORMATICS - ()
11573/395874 - 2006 -
A novel structure-based encoding for machine-learning applied to the prediction of SH3 domain specificity. Ferraro, E; Via, Allegra; Ausiello, G.; Helmer Citterich, M. - 01a Articolo in rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 2333-2339 - issn: 1367-4803 - wos: WOS:000241271000004 (21) - scopus: 2-s2.0-33750030012 (21)
book: BIOINFORMATICS - ()
11573/395878 - 2005 -
Query3d: a new method for high- throughput analysis of functional residues in protein structures. Ausiello, G; Via, Allegra; Helmer Citterich, M. - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S5-S11 - issn: 1471-2105 - wos: WOS:000236064600005 (39) - scopus: 2-s2.0-33947201695 (50)
book: BMC BIOINFORMATICS - ()
11573/395877 - 2005 -
pdbFun: Mass selection and fast comparison of annotated PDB residues. Ausiello, G; Zanzoni, A; Peluso, D; Via, Allegra; Helmer Citterich, M. - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. W133-W137 - issn: 0305-1048 - wos: WOS:000230271400024 (23) - scopus: 2-s2.0-23144463514 (31)
book: NUCLEIC ACIDS RESEARCH - ()
11573/395879 - 2005 -
A neural strategy for the inference of SH3 domain-peptide interaction specificity Enrico, Ferraro; Via, Allegra; Gabriele, Ausiello; Manuela Helmer, Citterich - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. S13-S19 - issn: 1471-2105 - wos: WOS:000236064600013 (8) - scopus: 2-s2.0-33947315301 (10)
book: BMC BIOINFORMATICS - ()
11573/395876 - 2005 -
Seq2Struct: a resource for establishing sequence-structure links Via, Allegra; A., Zanzoni; M., Helmer Citterich - 01a Articolo in rivista
paper: BIOINFORMATICS (-Oxford : Oxford University Press, 1998-) pp. 551-553 - issn: 1367-4803 - wos: WOS:000227127000020 (8) - scopus: 2-s2.0-14644435044 (8)
book: BIOINFORMATICS - ()
11573/395881 - 2004 -
Phospho.ELM: A database of experimentally verified phosphorylation sites in eukaryotic proteins F., Diella; S., Cameron; C., Gemund; R., Linding; Via, Allegra; B., Kuster; T., Sicheritz Ponten; N., Blom; T. J., Gibson - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 79-84 - issn: 1471-2105 - wos: WOS:000222617100001 (290) - scopus: 2-s2.0-13244289881 (313)
11573/395880 - 2004 -
A structural study for the optimisation of functional motifs encoded in protein sequences Via, Allegra; M., Helmer Citterich - 01a Articolo in rivista
paper: BMC BIOINFORMATICS ([London]: BioMed Central, [2000]-) pp. 50-62 - issn: 1471-2105 - wos: WOS:000222226000002 (6) - scopus: 2-s2.0-2942549126 (7)
book: BMC BIOINFORMATICS - ()
11573/395883 - 2003 -
Development of computational tools for the inference of protein interaction specificity rules and functional annotation using structural information. Ferre, F; Via, Allegra; Ausiello, G; Brannetti, B; Zanzoni, A.; Helmer Citterich, M. - 01a Articolo in rivista
paper: COMPARATIVE AND FUNCTIONAL GENOMICS () pp. 416-419 - issn: 1531-6912 - wos: WOS:000185279400008 (1) - scopus: 2-s2.0-0042386403 (1)
book: COMPARATIVE AND FUNCTIONAL GENOMICS - ()
11573/395882 - 2003 -
The ELM server: A new source for revealing short functional sites in modular eukaryotic proteins. Nucleic Acids Res., 31(13):3625-30. Puntervoll, P; Linding, R; Gemnd, C; Chabanis Davidson, S; Ramu, C; Mattingsdal, M; Cameron, S; Martin D. M., A; Ausiello, G; Brannetti, B; Costantini, A; Ferr, F; Maselli, V; Via, Allegra; Cesareni, G; Diella, F; Superti Furga, G; Wyrwicz, L; Mcguigan, C; Gudavalli, R; Letunic, I; Bork, P; Rychlewski, L; Kster, B; Helmer Citterich, M; Hunter W., N; Aasland, R.; Gibson, T. J. - 01a Articolo in rivista
paper: NUCLEIC ACIDS RESEARCH (Oxford University Press:Journals Department, Great Clarendon Street, Oxford OX2 6DP United Kingdom:011 44 1865 556767, EMAIL: jnlorders@oup.co.uk, INTERNET: http://www.oup.co.uk, Fax: 011 44 1865 267485
Editore precedente:
Information Retrieval ltd., London) pp. 3625-3630 - issn: 0305-1048 - wos: (0) - scopus: 2-s2.0-0042622252 (526)
book: NUCLEIC ACIDS RESEARCH - ()
11573/396072 - 2002 -
Theoretical aspects of Protein Sequence Alignments Brannetti, B.; Via, Allegra - 02a Capitolo o Articolo
book: The Internet for Cell and Molecular Biologists - (1898486328; 9781898486329)
11573/396201 - 2002 -
Practical aspects of Protein Sequence Analysis Via, Allegra - 02a Capitolo o Articolo
book: The Internet for Cell and Molecular Biologists - (1898486328)
11573/395884 - 2000 -
SH3-SPOT:an algorithm to predict preferred ligands to different members of sh3 gene family Brannetti, B; Via, Allegra; Cesareni, G; Helmer Citterich, M. - 01a Articolo in rivista
paper: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 313-328 - issn: 0022-2836 - wos: WOS:000086831200012 (72) - scopus: (0)
book: JOURNAL OF MOLECULAR BIOLOGY - ()
11573/395885 - 2000 -
Protein surface similarities: a survey of methods to describe and compare protein surfaces. Cell Mol Life Sci., 57 (13-14):1970-7. Review. Via, Allegra; Ferre, F; Brannetti, B; Helmer Citterich, M. - 01a Articolo in rivista
paper: CELLULAR AND MOLECULAR LIFE SCIENCES (Birkhaeuser Verlag AG:Viaduktstrasse 42-44, CH 4051 Basel Switzerland:011 41 61 2050707, EMAIL: subscriptions@birkhauser.ch, INTERNET: http://www.birkhauser.ch, Fax: 011 41 61 2050792) pp. 1970-1977 - issn: 1420-682X - wos: (0) - scopus: 2-s2.0-0034489092 (57)
book: CELLULAR AND MOLECULAR LIFE SCIENCES - ()
11573/395886 - 2000 -
3D view of the surface motif associated to the ploop structure: cis and trans cases of convergent evolution. J. Mol. Biol., 303 (4): 455-65. Via, Allegra; Ferre, F; Brannetti, B; Valencia, A; Helmer Citterich, M. - 01a Articolo in rivista
paper: JOURNAL OF MOLECULAR BIOLOGY (-LONDON, ENGLAND: ACADEMIC PRESS LTD ELSEVIER SCIENCE LTD,
-London; New York: Academic Press.) pp. 455-465 - issn: 0022-2836 - wos: (0) - scopus: 2-s2.0-0034602364 (71)
book: JOURNAL OF MOLECULAR BIOLOGY - ()